miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 3' -63.9 NC_005264.1 + 40787 0.67 0.474267
Target:  5'- cCGCGGCGCCGaGagcggaGCCGCuuGCcgcGGGGUc -3'
miRNA:   3'- -GCGCCGCGGC-Cg-----CGGCG--CGa--UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 67514 0.67 0.474267
Target:  5'- uCGCGGCGcCCGGCGgCggcaaucuccauGCGCUGccGUa -3'
miRNA:   3'- -GCGCCGC-GGCCGCgG------------CGCGAUucCAa -5'
24363 3' -63.9 NC_005264.1 + 40271 0.67 0.474267
Target:  5'- aCGCGGUG-CGGCGCUGCGUgac-GUUu -3'
miRNA:   3'- -GCGCCGCgGCCGCGGCGCGauucCAA- -5'
24363 3' -63.9 NC_005264.1 + 142696 0.67 0.474267
Target:  5'- --gGGCGCCGGCGgCGCGCc------ -3'
miRNA:   3'- gcgCCGCGGCCGCgGCGCGauuccaa -5'
24363 3' -63.9 NC_005264.1 + 3401 0.67 0.474267
Target:  5'- aCGCGGgGUCGGUGCgCGgGggAGGGa- -3'
miRNA:   3'- -GCGCCgCGGCCGCG-GCgCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 78977 0.67 0.474267
Target:  5'- uGUGGUGCC-GCGCCGaaaCUAAGGa- -3'
miRNA:   3'- gCGCCGCGGcCGCGGCgc-GAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 120734 0.67 0.474267
Target:  5'- gGaCGGUGCCGGCGaCUGCGaCgacAGGGa- -3'
miRNA:   3'- gC-GCCGCGGCCGC-GGCGC-Ga--UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 122428 0.67 0.474267
Target:  5'- aCGCGGgGUCGGUGCgCGgGggAGGGa- -3'
miRNA:   3'- -GCGCCgCGGCCGCG-GCgCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 136473 0.67 0.474267
Target:  5'- aGaCGGCGCCGcGCagccuGCCGCGgcgcacaagaCUAAGGUc -3'
miRNA:   3'- gC-GCCGCGGC-CG-----CGGCGC----------GAUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 61832 0.67 0.474267
Target:  5'- uGCcuGGCucGCCuGCGCCGCGUacGGGUUg -3'
miRNA:   3'- gCG--CCG--CGGcCGCGGCGCGauUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 8377 0.67 0.465347
Target:  5'- -cCGGCGCCGGaCGCgGCGCguugAAGc-- -3'
miRNA:   3'- gcGCCGCGGCC-GCGgCGCGa---UUCcaa -5'
24363 3' -63.9 NC_005264.1 + 127404 0.67 0.465347
Target:  5'- -cCGGCGCCGGaCGCgGCGCguugAAGc-- -3'
miRNA:   3'- gcGCCGCGGCC-GCGgCGCGa---UUCcaa -5'
24363 3' -63.9 NC_005264.1 + 60847 0.67 0.465347
Target:  5'- gCGuCGGCGUCGGCGCgUGCGCg------ -3'
miRNA:   3'- -GC-GCCGCGGCCGCG-GCGCGauuccaa -5'
24363 3' -63.9 NC_005264.1 + 136367 0.67 0.465347
Target:  5'- gGCGcUGCCGGCGCgaauaGCGCUGuGGa- -3'
miRNA:   3'- gCGCcGCGGCCGCGg----CGCGAUuCCaa -5'
24363 3' -63.9 NC_005264.1 + 16569 0.68 0.456515
Target:  5'- gGCGGCGCCGGgGCgGCGg------- -3'
miRNA:   3'- gCGCCGCGGCCgCGgCGCgauuccaa -5'
24363 3' -63.9 NC_005264.1 + 148446 0.68 0.455637
Target:  5'- gGUGGUcagaacaGCCGGCGCC-CGCgAGGGa- -3'
miRNA:   3'- gCGCCG-------CGGCCGCGGcGCGaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 132589 0.68 0.447774
Target:  5'- aGCGGCGCgGGCGggaCCGgGgaAGGGc- -3'
miRNA:   3'- gCGCCGCGgCCGC---GGCgCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 13562 0.68 0.447774
Target:  5'- aGCGGCGCgGGCGggaCCGgGgaAGGGc- -3'
miRNA:   3'- gCGCCGCGgCCGC---GGCgCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 87746 0.68 0.446905
Target:  5'- -uCGGCGCCGGCGCCugccgcaGCGCcgcgAAGa-- -3'
miRNA:   3'- gcGCCGCGGCCGCGG-------CGCGa---UUCcaa -5'
24363 3' -63.9 NC_005264.1 + 31270 0.68 0.439126
Target:  5'- --aGGCGCCaGGUGCCGCGCa------ -3'
miRNA:   3'- gcgCCGCGG-CCGCGGCGCGauuccaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.