miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 3' -63.9 NC_005264.1 + 20261 0.66 0.548373
Target:  5'- uGCGGCG-CGGCcUCGCGgaGGGGa- -3'
miRNA:   3'- gCGCCGCgGCCGcGGCGCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 9908 0.66 0.53888
Target:  5'- gGCGGCagaaaGgCGGCGCuaucuCGCGCU-AGGUUc -3'
miRNA:   3'- gCGCCG-----CgGCCGCG-----GCGCGAuUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 30394 0.66 0.53888
Target:  5'- -uCGGCGgCGGCgGUCGCGCgccGGUg -3'
miRNA:   3'- gcGCCGCgGCCG-CGGCGCGauuCCAa -5'
24363 3' -63.9 NC_005264.1 + 149421 0.66 0.53888
Target:  5'- -uCGGCGgCGGCgGUCGCGCgccGGUg -3'
miRNA:   3'- gcGCCGCgGCCG-CGGCGCGauuCCAa -5'
24363 3' -63.9 NC_005264.1 + 128934 0.66 0.53888
Target:  5'- gGCGGCagaaaGgCGGCGCuaucuCGCGCU-AGGUUc -3'
miRNA:   3'- gCGCCG-----CgGCCGCG-----GCGCGAuUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 12142 0.66 0.53888
Target:  5'- ----cCGCCGGCGCUGCccguuGCUGGGGUc -3'
miRNA:   3'- gcgccGCGGCCGCGGCG-----CGAUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 44572 0.66 0.53888
Target:  5'- gGCGacCGCCGGCaaccacGCCagcucuGCGCUAGGGUc -3'
miRNA:   3'- gCGCc-GCGGCCG------CGG------CGCGAUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 158248 0.66 0.529444
Target:  5'- cCGCGGCGCUGGCGgggagggcCUGCGUUcccGGc- -3'
miRNA:   3'- -GCGCCGCGGCCGC--------GGCGCGAuu-CCaa -5'
24363 3' -63.9 NC_005264.1 + 39221 0.66 0.529444
Target:  5'- cCGCGGCGCUGGCGgggagggcCUGCGUUcccGGc- -3'
miRNA:   3'- -GCGCCGCGGCCGC--------GGCGCGAuu-CCaa -5'
24363 3' -63.9 NC_005264.1 + 101340 0.66 0.526626
Target:  5'- gCGCGGCGCUagccgagaccgcggGGCGCgucggCGCGCUAGa--- -3'
miRNA:   3'- -GCGCCGCGG--------------CCGCG-----GCGCGAUUccaa -5'
24363 3' -63.9 NC_005264.1 + 45412 0.66 0.52007
Target:  5'- gGCGGCGCCcugcGCGCCGCGaCa------ -3'
miRNA:   3'- gCGCCGCGGc---CGCGGCGC-Gauuccaa -5'
24363 3' -63.9 NC_005264.1 + 5044 0.66 0.52007
Target:  5'- cCGCGuCGUgGGCGCCGCcuaGCUGGGa-- -3'
miRNA:   3'- -GCGCcGCGgCCGCGGCG---CGAUUCcaa -5'
24363 3' -63.9 NC_005264.1 + 58506 0.67 0.510761
Target:  5'- aGCGGCaCCuccucguaagcGGCGUCGCGCcucAAGGUc -3'
miRNA:   3'- gCGCCGcGG-----------CCGCGGCGCGa--UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 146942 0.67 0.501523
Target:  5'- uCGUGGCGCagaGGCuggaUgGCGCUGAGGc- -3'
miRNA:   3'- -GCGCCGCGg--CCGc---GgCGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 41743 0.67 0.501523
Target:  5'- aGCGGCGUauGUGCUGCGauucaucgGAGGUc -3'
miRNA:   3'- gCGCCGCGgcCGCGGCGCga------UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 17358 0.67 0.501523
Target:  5'- cCGCGGCaGCUGGCGgCgGCGC---GGUc -3'
miRNA:   3'- -GCGCCG-CGGCCGC-GgCGCGauuCCAa -5'
24363 3' -63.9 NC_005264.1 + 93247 0.67 0.492359
Target:  5'- gGCGGCGCCcucgucGGCGCguuCGCGCaaccugaauAGGUc -3'
miRNA:   3'- gCGCCGCGG------CCGCG---GCGCGau-------UCCAa -5'
24363 3' -63.9 NC_005264.1 + 112988 0.67 0.483272
Target:  5'- gCGCGGCGucaccagggccCCGGUGCCGUGUUuu-GUUg -3'
miRNA:   3'- -GCGCCGC-----------GGCCGCGGCGCGAuucCAA- -5'
24363 3' -63.9 NC_005264.1 + 148310 0.67 0.483272
Target:  5'- gCGUGcGCGCCGGUGuUCGUaugGuCUGAGGUUg -3'
miRNA:   3'- -GCGC-CGCGGCCGC-GGCG---C-GAUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 107660 0.67 0.483272
Target:  5'- uCGCGGuCGCCGccuucaGCCGCGCccaGAGGc- -3'
miRNA:   3'- -GCGCC-GCGGCcg----CGGCGCGa--UUCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.