miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 3' -63.9 NC_005264.1 + 21989 0.66 0.548373
Target:  5'- gGCcuGGCGCaagcgaaaGGCGCgGCGCguAGGUUu -3'
miRNA:   3'- gCG--CCGCGg-------CCGCGgCGCGauUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 24202 0.71 0.287772
Target:  5'- gCGCGGUGCCGGUggccgaaGCCaGCGCgccGGGa- -3'
miRNA:   3'- -GCGCCGCGGCCG-------CGG-CGCGau-UCCaa -5'
24363 3' -63.9 NC_005264.1 + 25540 0.68 0.430575
Target:  5'- gGCGGCGCggacaaGGCGCuuguCGCGCUcguccAGGGg- -3'
miRNA:   3'- gCGCCGCGg-----CCGCG----GCGCGA-----UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 25630 0.73 0.21927
Target:  5'- gGCGGCGgUGGgGCCGCGCUccGcGUUu -3'
miRNA:   3'- gCGCCGCgGCCgCGGCGCGAuuC-CAA- -5'
24363 3' -63.9 NC_005264.1 + 26651 0.92 0.010221
Target:  5'- gCGCGGCGCCGGCGCCGCGCUAGa--- -3'
miRNA:   3'- -GCGCCGCGGCCGCGGCGCGAUUccaa -5'
24363 3' -63.9 NC_005264.1 + 27930 0.7 0.321925
Target:  5'- cCGCGGUGuuGGCGUucUGCGCgucGGUg -3'
miRNA:   3'- -GCGCCGCggCCGCG--GCGCGauuCCAa -5'
24363 3' -63.9 NC_005264.1 + 29896 0.69 0.365865
Target:  5'- cCGCgaaGGCGUgCGGCGCUaccccgucgGCGCUAGGGa- -3'
miRNA:   3'- -GCG---CCGCG-GCCGCGG---------CGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 30394 0.66 0.53888
Target:  5'- -uCGGCGgCGGCgGUCGCGCgccGGUg -3'
miRNA:   3'- gcGCCGCgGCCG-CGGCGCGauuCCAa -5'
24363 3' -63.9 NC_005264.1 + 31270 0.68 0.439126
Target:  5'- --aGGCGCCaGGUGCCGCGCa------ -3'
miRNA:   3'- gcgCCGCGG-CCGCGGCGCGauuccaa -5'
24363 3' -63.9 NC_005264.1 + 33943 0.66 0.557917
Target:  5'- cCGUGGCgcGCCGG-GaCCGCGCccgaUAGGGg- -3'
miRNA:   3'- -GCGCCG--CGGCCgC-GGCGCG----AUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 39221 0.66 0.529444
Target:  5'- cCGCGGCGCUGGCGgggagggcCUGCGUUcccGGc- -3'
miRNA:   3'- -GCGCCGCGGCCGC--------GGCGCGAuu-CCaa -5'
24363 3' -63.9 NC_005264.1 + 40271 0.67 0.474267
Target:  5'- aCGCGGUG-CGGCGCUGCGUgac-GUUu -3'
miRNA:   3'- -GCGCCGCgGCCGCGGCGCGauucCAA- -5'
24363 3' -63.9 NC_005264.1 + 40787 0.67 0.474267
Target:  5'- cCGCGGCGCCGaGagcggaGCCGCuuGCcgcGGGGUc -3'
miRNA:   3'- -GCGCCGCGGC-Cg-----CGGCG--CGa--UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 41419 0.66 0.557917
Target:  5'- --aGGCagGCCGGCGCCGgGCUccugcGGGc- -3'
miRNA:   3'- gcgCCG--CGGCCGCGGCgCGAu----UCCaa -5'
24363 3' -63.9 NC_005264.1 + 41743 0.67 0.501523
Target:  5'- aGCGGCGUauGUGCUGCGauucaucgGAGGUc -3'
miRNA:   3'- gCGCCGCGgcCGCGGCGCga------UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 42068 0.68 0.422122
Target:  5'- cCGCGGCGCgUGGCgucaGCUGCGCc-GGGa- -3'
miRNA:   3'- -GCGCCGCG-GCCG----CGGCGCGauUCCaa -5'
24363 3' -63.9 NC_005264.1 + 43667 0.69 0.381403
Target:  5'- gGC-GCGCUGcGCGCCgGCGUUAAGGc- -3'
miRNA:   3'- gCGcCGCGGC-CGCGG-CGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 44572 0.66 0.53888
Target:  5'- gGCGacCGCCGGCaaccacGCCagcucuGCGCUAGGGUc -3'
miRNA:   3'- gCGCc-GCGGCCG------CGG------CGCGAUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 45412 0.66 0.52007
Target:  5'- gGCGGCGCCcugcGCGCCGCGaCa------ -3'
miRNA:   3'- gCGCCGCGGc---CGCGGCGC-Gauuccaa -5'
24363 3' -63.9 NC_005264.1 + 50587 0.68 0.430575
Target:  5'- aCGCGGCGCUGaGCaGCCcgGCGCUGGa--- -3'
miRNA:   3'- -GCGCCGCGGC-CG-CGG--CGCGAUUccaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.