miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 3' -63.9 NC_005264.1 + 2178 0.8 0.071213
Target:  5'- cCGCGGCcguugccccuccauuGCCGGCGCCcaugcGCGCUAAGGg- -3'
miRNA:   3'- -GCGCCG---------------CGGCCGCGG-----CGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 2885 0.7 0.336121
Target:  5'- cCGgGGCG-CGGCGCgGCGggGAGGg- -3'
miRNA:   3'- -GCgCCGCgGCCGCGgCGCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 3401 0.67 0.474267
Target:  5'- aCGCGGgGUCGGUGCgCGgGggAGGGa- -3'
miRNA:   3'- -GCGCCgCGGCCGCG-GCgCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 3460 0.68 0.41377
Target:  5'- cCGUGGCGcCCGGUGCCGCauccacgaugugGCacgcgucgugGAGGUUu -3'
miRNA:   3'- -GCGCCGC-GGCCGCGGCG------------CGa---------UUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 5044 0.66 0.52007
Target:  5'- cCGCGuCGUgGGCGCCGCcuaGCUGGGa-- -3'
miRNA:   3'- -GCGCcGCGgCCGCGGCG---CGAUUCcaa -5'
24363 3' -63.9 NC_005264.1 + 6836 0.66 0.567508
Target:  5'- gGCGGCGacuaUGGCGCCaGCGCg------ -3'
miRNA:   3'- gCGCCGCg---GCCGCGG-CGCGauuccaa -5'
24363 3' -63.9 NC_005264.1 + 7057 0.75 0.168817
Target:  5'- aGCGGCgacggcgccgGCCGGCGCCGuCGCgcugcggggaacUGAGGUUu -3'
miRNA:   3'- gCGCCG----------CGGCCGCGGC-GCG------------AUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 7397 0.72 0.235108
Target:  5'- uCGCGGCcCCGGCGCCGuCGUccauuGGUUc -3'
miRNA:   3'- -GCGCCGcGGCCGCGGC-GCGauu--CCAA- -5'
24363 3' -63.9 NC_005264.1 + 7871 0.77 0.11682
Target:  5'- gGCGGCGUCGGCGCCccagaugcgGCGUcgGAGGUc -3'
miRNA:   3'- gCGCCGCGGCCGCGG---------CGCGa-UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 8321 0.69 0.381403
Target:  5'- cCGCGGCGUCGcCGUCGUcccCUAGGGUUu -3'
miRNA:   3'- -GCGCCGCGGCcGCGGCGc--GAUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 8377 0.67 0.465347
Target:  5'- -cCGGCGCCGGaCGCgGCGCguugAAGc-- -3'
miRNA:   3'- gcGCCGCGGCC-GCGgCGCGa---UUCcaa -5'
24363 3' -63.9 NC_005264.1 + 9908 0.66 0.53888
Target:  5'- gGCGGCagaaaGgCGGCGCuaucuCGCGCU-AGGUUc -3'
miRNA:   3'- gCGCCG-----CgGCCGCG-----GCGCGAuUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 12142 0.66 0.53888
Target:  5'- ----cCGCCGGCGCUGCccguuGCUGGGGUc -3'
miRNA:   3'- gcgccGCGGCCGCGGCG-----CGAUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 13562 0.68 0.447774
Target:  5'- aGCGGCGCgGGCGggaCCGgGgaAGGGc- -3'
miRNA:   3'- gCGCCGCGgCCGC---GGCgCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 16569 0.68 0.456515
Target:  5'- gGCGGCGCCGGgGCgGCGg------- -3'
miRNA:   3'- gCGCCGCGGCCgCGgCGCgauuccaa -5'
24363 3' -63.9 NC_005264.1 + 17358 0.67 0.501523
Target:  5'- cCGCGGCaGCUGGCGgCgGCGC---GGUc -3'
miRNA:   3'- -GCGCCG-CGGCCGC-GgCGCGauuCCAa -5'
24363 3' -63.9 NC_005264.1 + 18048 0.7 0.343389
Target:  5'- aCGCGaaGCGgCGGCGCCGCGagccAGGg- -3'
miRNA:   3'- -GCGC--CGCgGCCGCGGCGCgau-UCCaa -5'
24363 3' -63.9 NC_005264.1 + 20261 0.66 0.548373
Target:  5'- uGCGGCG-CGGCcUCGCGgaGGGGa- -3'
miRNA:   3'- gCGCCGCgGCCGcGGCGCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 20843 0.7 0.336121
Target:  5'- cCGCGGCauacgaCGGCGCUGCGCgacuaaAAGGa- -3'
miRNA:   3'- -GCGCCGcg----GCCGCGGCGCGa-----UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 21566 0.66 0.557917
Target:  5'- cCGaGGaCGCCGGCGCCGagacCGUggaaAGGGUg -3'
miRNA:   3'- -GCgCC-GCGGCCGCGGC----GCGa---UUCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.