miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 3' -63.9 NC_005264.1 + 136194 1.04 0.001231
Target:  5'- gCGCGGCGCCGGCGCCGCGCUAAGGUUc -3'
miRNA:   3'- -GCGCCGCGGCCGCGGCGCGAUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 26651 0.92 0.010221
Target:  5'- gCGCGGCGCCGGCGCCGCGCUAGa--- -3'
miRNA:   3'- -GCGCCGCGGCCGCGGCGCGAUUccaa -5'
24363 3' -63.9 NC_005264.1 + 75101 0.82 0.047923
Target:  5'- gGCaGGCGCCGGCGCCGaGCUGGGGc- -3'
miRNA:   3'- gCG-CCGCGGCCGCGGCgCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 2178 0.8 0.071213
Target:  5'- cCGCGGCcguugccccuccauuGCCGGCGCCcaugcGCGCUAAGGg- -3'
miRNA:   3'- -GCGCCG---------------CGGCCGCGG-----CGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 7871 0.77 0.11682
Target:  5'- gGCGGCGUCGGCGCCccagaugcgGCGUcgGAGGUc -3'
miRNA:   3'- gCGCCGCGGCCGCGG---------CGCGa-UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 126897 0.77 0.11682
Target:  5'- gGCGGCGUCGGCGCCccagaugcgGCGUcgGAGGUc -3'
miRNA:   3'- gCGCCGCGGCCGCGG---------CGCGa-UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 98221 0.75 0.149513
Target:  5'- -aCGGCGUCGG-GCCGCGCUgcggaGAGGUUa -3'
miRNA:   3'- gcGCCGCGGCCgCGGCGCGA-----UUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 126084 0.75 0.168817
Target:  5'- aGCGGCgacggcgccgGCCGGCGCCGuCGCgcugcggggaacUGAGGUUu -3'
miRNA:   3'- gCGCCG----------CGGCCGCGGC-GCG------------AUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 7057 0.75 0.168817
Target:  5'- aGCGGCgacggcgccgGCCGGCGCCGuCGCgcugcggggaacUGAGGUUu -3'
miRNA:   3'- gCGCCG----------CGGCCGCGGC-GCG------------AUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 149231 0.74 0.194902
Target:  5'- aGCGGUcacugucgcugGCCGGUGUgGCGCUGGGGc- -3'
miRNA:   3'- gCGCCG-----------CGGCCGCGgCGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 71411 0.74 0.201476
Target:  5'- cCGUGGCuaugacacagacuccGCCGGUGCCccgGCGCUAGGGc- -3'
miRNA:   3'- -GCGCCG---------------CGGCCGCGG---CGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 77269 0.73 0.204352
Target:  5'- aCGUGGUGCaCGGUGCCGCGCUc----- -3'
miRNA:   3'- -GCGCCGCG-GCCGCGGCGCGAuuccaa -5'
24363 3' -63.9 NC_005264.1 + 25630 0.73 0.21927
Target:  5'- gGCGGCGgUGGgGCCGCGCUccGcGUUu -3'
miRNA:   3'- gCGCCGCgGCCgCGGCGCGAuuC-CAA- -5'
24363 3' -63.9 NC_005264.1 + 66613 0.73 0.21927
Target:  5'- cCGCGuuGCCGGCGCCGuCGCggcccGAGGc- -3'
miRNA:   3'- -GCGCcgCGGCCGCGGC-GCGa----UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 155447 0.73 0.229724
Target:  5'- aCGaCGGCGCCGGgGCCGCGaucgAAGa-- -3'
miRNA:   3'- -GC-GCCGCGGCCgCGGCGCga--UUCcaa -5'
24363 3' -63.9 NC_005264.1 + 7397 0.72 0.235108
Target:  5'- uCGCGGCcCCGGCGCCGuCGUccauuGGUUc -3'
miRNA:   3'- -GCGCCGcGGCCGCGGC-GCGauu--CCAA- -5'
24363 3' -63.9 NC_005264.1 + 103129 0.72 0.251895
Target:  5'- gCGCGGUagccGCCGGCGCgGCGCgc-GGc- -3'
miRNA:   3'- -GCGCCG----CGGCCGCGgCGCGauuCCaa -5'
24363 3' -63.9 NC_005264.1 + 52950 0.72 0.263626
Target:  5'- cCGCGGCGCauuGCGCCGCG---GGGUa -3'
miRNA:   3'- -GCGCCGCGgc-CGCGGCGCgauUCCAa -5'
24363 3' -63.9 NC_005264.1 + 93449 0.72 0.263626
Target:  5'- uGUGGCGCagguGGuCGCCGCGgaGAGGa- -3'
miRNA:   3'- gCGCCGCGg---CC-GCGGCGCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 156184 0.71 0.269048
Target:  5'- uGCGGCGUggCGGCGCCG-GCUAuaugucggggcgcAGGUc -3'
miRNA:   3'- gCGCCGCG--GCCGCGGCgCGAU-------------UCCAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.