miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 3' -63.9 NC_005264.1 + 58744 0.69 0.371253
Target:  5'- cCGCGGcCGCCgcugcgcuaucagaGGCGCaCGCGCgguGGUc -3'
miRNA:   3'- -GCGCC-GCGG--------------CCGCG-GCGCGauuCCAa -5'
24363 3' -63.9 NC_005264.1 + 60617 0.7 0.321925
Target:  5'- cCGCGGCaGCCGGC-UCGCGC--AGGa- -3'
miRNA:   3'- -GCGCCG-CGGCCGcGGCGCGauUCCaa -5'
24363 3' -63.9 NC_005264.1 + 27930 0.7 0.321925
Target:  5'- cCGCGGUGuuGGCGUucUGCGCgucGGUg -3'
miRNA:   3'- -GCGCCGCggCCGCG--GCGCGauuCCAa -5'
24363 3' -63.9 NC_005264.1 + 121911 0.7 0.336121
Target:  5'- cCGgGGCG-CGGCGCgGCGggGAGGg- -3'
miRNA:   3'- -GCgCCGCgGCCGCGgCGCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 20843 0.7 0.336121
Target:  5'- cCGCGGCauacgaCGGCGCUGCGCgacuaaAAGGa- -3'
miRNA:   3'- -GCGCCGcg----GCCGCGGCGCGa-----UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 18048 0.7 0.343389
Target:  5'- aCGCGaaGCGgCGGCGCCGCGagccAGGg- -3'
miRNA:   3'- -GCGC--CGCgGCCGCGGCGCgau-UCCaa -5'
24363 3' -63.9 NC_005264.1 + 146752 0.7 0.350769
Target:  5'- gGCGGCGgacCCGGCaacagcaagcGCCGCGCggcGGUUc -3'
miRNA:   3'- gCGCCGC---GGCCG----------CGGCGCGauuCCAA- -5'
24363 3' -63.9 NC_005264.1 + 64735 0.69 0.358261
Target:  5'- -uCGGCGCCGuGCcCCGCGC-AAGGa- -3'
miRNA:   3'- gcGCCGCGGC-CGcGGCGCGaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 29896 0.69 0.365865
Target:  5'- cCGCgaaGGCGUgCGGCGCUaccccgucgGCGCUAGGGa- -3'
miRNA:   3'- -GCG---CCGCG-GCCGCGG---------CGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 78502 0.7 0.314996
Target:  5'- uCGaCGGUGuuGGCaCCGCGCU-GGGUa -3'
miRNA:   3'- -GC-GCCGCggCCGcGGCGCGAuUCCAa -5'
24363 3' -63.9 NC_005264.1 + 24202 0.71 0.287772
Target:  5'- gCGCGGUGCCGGUggccgaaGCCaGCGCgccGGGa- -3'
miRNA:   3'- -GCGCCGCGGCCG-------CGG-CGCGau-UCCaa -5'
24363 3' -63.9 NC_005264.1 + 52950 0.72 0.263626
Target:  5'- cCGCGGCGCauuGCGCCGCG---GGGUa -3'
miRNA:   3'- -GCGCCGCGgc-CGCGGCGCgauUCCAa -5'
24363 3' -63.9 NC_005264.1 + 75101 0.82 0.047923
Target:  5'- gGCaGGCGCCGGCGCCGaGCUGGGGc- -3'
miRNA:   3'- gCG-CCGCGGCCGCGGCgCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 2178 0.8 0.071213
Target:  5'- cCGCGGCcguugccccuccauuGCCGGCGCCcaugcGCGCUAAGGg- -3'
miRNA:   3'- -GCGCCG---------------CGGCCGCGG-----CGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 126897 0.77 0.11682
Target:  5'- gGCGGCGUCGGCGCCccagaugcgGCGUcgGAGGUc -3'
miRNA:   3'- gCGCCGCGGCCGCGG---------CGCGa-UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 98221 0.75 0.149513
Target:  5'- -aCGGCGUCGG-GCCGCGCUgcggaGAGGUUa -3'
miRNA:   3'- gcGCCGCGGCCgCGGCGCGA-----UUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 126084 0.75 0.168817
Target:  5'- aGCGGCgacggcgccgGCCGGCGCCGuCGCgcugcggggaacUGAGGUUu -3'
miRNA:   3'- gCGCCG----------CGGCCGCGGC-GCG------------AUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 71411 0.74 0.201476
Target:  5'- cCGUGGCuaugacacagacuccGCCGGUGCCccgGCGCUAGGGc- -3'
miRNA:   3'- -GCGCCG---------------CGGCCGCGG---CGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 66613 0.73 0.21927
Target:  5'- cCGCGuuGCCGGCGCCGuCGCggcccGAGGc- -3'
miRNA:   3'- -GCGCcgCGGCCGCGGC-GCGa----UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 7397 0.72 0.235108
Target:  5'- uCGCGGCcCCGGCGCCGuCGUccauuGGUUc -3'
miRNA:   3'- -GCGCCGcGGCCGCGGC-GCGauu--CCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.