miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 3' -63.9 NC_005264.1 + 109893 0.66 0.577139
Target:  5'- cCGCGGCGCaauGCGCCGCGggcgcGGc- -3'
miRNA:   3'- -GCGCCGCGgc-CGCGGCGCgauu-CCaa -5'
24363 3' -63.9 NC_005264.1 + 39221 0.66 0.529444
Target:  5'- cCGCGGCGCUGGCGgggagggcCUGCGUUcccGGc- -3'
miRNA:   3'- -GCGCCGCGGCCGC--------GGCGCGAuu-CCaa -5'
24363 3' -63.9 NC_005264.1 + 45412 0.66 0.52007
Target:  5'- gGCGGCGCCcugcGCGCCGCGaCa------ -3'
miRNA:   3'- gCGCCGCGGc---CGCGGCGC-Gauuccaa -5'
24363 3' -63.9 NC_005264.1 + 136194 1.04 0.001231
Target:  5'- gCGCGGCGCCGGCGCCGCGCUAAGGUUc -3'
miRNA:   3'- -GCGCCGCGGCCGCGGCGCGAUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 6836 0.66 0.567508
Target:  5'- gGCGGCGacuaUGGCGCCaGCGCg------ -3'
miRNA:   3'- gCGCCGCg---GCCGCGG-CGCGauuccaa -5'
24363 3' -63.9 NC_005264.1 + 129499 0.66 0.567508
Target:  5'- gGCGGCGCagGGUuugGCgGCGCcgGAGGc- -3'
miRNA:   3'- gCGCCGCGg-CCG---CGgCGCGa-UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 162441 0.66 0.561748
Target:  5'- aCGCGaacagguacacgaccGCGCCGGCGCUGCcCcccaaagaccaaUAAGGUc -3'
miRNA:   3'- -GCGC---------------CGCGGCCGCGGCGcG------------AUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 131577 0.66 0.557917
Target:  5'- gCGCGGCaCCuGGCGCCuagGUGUgGAGGg- -3'
miRNA:   3'- -GCGCCGcGG-CCGCGG---CGCGaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 120075 0.66 0.557917
Target:  5'- gGCGGaCGCCGGCuagcgggaGUCGUGCccaccGGGUg -3'
miRNA:   3'- gCGCC-GCGGCCG--------CGGCGCGau---UCCAa -5'
24363 3' -63.9 NC_005264.1 + 9908 0.66 0.53888
Target:  5'- gGCGGCagaaaGgCGGCGCuaucuCGCGCU-AGGUUc -3'
miRNA:   3'- gCGCCG-----CgGCCGCG-----GCGCGAuUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 96231 0.66 0.548373
Target:  5'- gCGaCGGCGCCGGCaacGCgGCGCa------ -3'
miRNA:   3'- -GC-GCCGCGGCCG---CGgCGCGauuccaa -5'
24363 3' -63.9 NC_005264.1 + 33943 0.66 0.557917
Target:  5'- cCGUGGCgcGCCGG-GaCCGCGCccgaUAGGGg- -3'
miRNA:   3'- -GCGCCG--CGGCCgC-GGCGCG----AUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 136337 0.66 0.577139
Target:  5'- cCGCGGCGUagaagcugguuCGGCGCCGCaC--GGGc- -3'
miRNA:   3'- -GCGCCGCG-----------GCCGCGGCGcGauUCCaa -5'
24363 3' -63.9 NC_005264.1 + 61916 0.66 0.548373
Target:  5'- --aGGCGCacgGGCGCCGcCGCUugcgcgaaGAGGa- -3'
miRNA:   3'- gcgCCGCGg--CCGCGGC-GCGA--------UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 108468 0.66 0.577139
Target:  5'- gCGCGGgGauCCGGUgGCCGCGCgacgcuucUAAGGc- -3'
miRNA:   3'- -GCGCCgC--GGCCG-CGGCGCG--------AUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 56922 0.66 0.557917
Target:  5'- gGCGGCGUaCGuGCGUgGCGCacGGGg- -3'
miRNA:   3'- gCGCCGCG-GC-CGCGgCGCGauUCCaa -5'
24363 3' -63.9 NC_005264.1 + 30394 0.66 0.53888
Target:  5'- -uCGGCGgCGGCgGUCGCGCgccGGUg -3'
miRNA:   3'- gcGCCGCgGCCG-CGGCGCGauuCCAa -5'
24363 3' -63.9 NC_005264.1 + 101340 0.66 0.526626
Target:  5'- gCGCGGCGCUagccgagaccgcggGGCGCgucggCGCGCUAGa--- -3'
miRNA:   3'- -GCGCCGCGG--------------CCGCG-----GCGCGAUUccaa -5'
24363 3' -63.9 NC_005264.1 + 82216 0.66 0.577139
Target:  5'- aGCGGCGCCaGCaUCGCGUaGAGuGUc -3'
miRNA:   3'- gCGCCGCGGcCGcGGCGCGaUUC-CAa -5'
24363 3' -63.9 NC_005264.1 + 82366 0.66 0.566547
Target:  5'- gGCaGGCGCgucgaucCGGUGCCGgGCgcAGGg- -3'
miRNA:   3'- gCG-CCGCG-------GCCGCGGCgCGauUCCaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.