miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 3' -63.9 NC_005264.1 + 162693 0.69 0.381403
Target:  5'- gGC-GCGCUGcGCGCCgGCGUUAAGGc- -3'
miRNA:   3'- gCGcCGCGGC-CGCGG-CGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 162441 0.66 0.561748
Target:  5'- aCGCGaacagguacacgaccGCGCCGGCGCUGCcCcccaaagaccaaUAAGGUc -3'
miRNA:   3'- -GCGC---------------CGCGGCCGCGGCGcG------------AUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 160446 0.66 0.557917
Target:  5'- --aGGCagGCCGGCGCCGgGCUccugcGGGc- -3'
miRNA:   3'- gcgCCG--CGGCCGCGGCgCGAu----UCCaa -5'
24363 3' -63.9 NC_005264.1 + 158248 0.66 0.529444
Target:  5'- cCGCGGCGCUGGCGgggagggcCUGCGUUcccGGc- -3'
miRNA:   3'- -GCGCCGCGGCCGC--------GGCGCGAuu-CCaa -5'
24363 3' -63.9 NC_005264.1 + 158063 0.69 0.381403
Target:  5'- gGUGcGCGaaCGGCGCCGCGCagAAGGc- -3'
miRNA:   3'- gCGC-CGCg-GCCGCGGCGCGa-UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 156184 0.71 0.269048
Target:  5'- uGCGGCGUggCGGCGCCG-GCUAuaugucggggcgcAGGUc -3'
miRNA:   3'- gCGCCGCG--GCCGCGGCgCGAU-------------UCCAa -5'
24363 3' -63.9 NC_005264.1 + 155447 0.73 0.229724
Target:  5'- aCGaCGGCGCCGGgGCCGCGaucgAAGa-- -3'
miRNA:   3'- -GC-GCCGCGGCCgCGGCGCga--UUCcaa -5'
24363 3' -63.9 NC_005264.1 + 152970 0.66 0.557917
Target:  5'- cCGUGGCgcGCCGG-GaCCGCGCccgaUAGGGg- -3'
miRNA:   3'- -GCGCCG--CGGCCgC-GGCGCG----AUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 149421 0.66 0.53888
Target:  5'- -uCGGCGgCGGCgGUCGCGCgccGGUg -3'
miRNA:   3'- gcGCCGCgGCCG-CGGCGCGauuCCAa -5'
24363 3' -63.9 NC_005264.1 + 149231 0.74 0.194902
Target:  5'- aGCGGUcacugucgcugGCCGGUGUgGCGCUGGGGc- -3'
miRNA:   3'- gCGCCG-----------CGGCCGCGgCGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 148446 0.68 0.455637
Target:  5'- gGUGGUcagaacaGCCGGCGCC-CGCgAGGGa- -3'
miRNA:   3'- gCGCCG-------CGGCCGCGGcGCGaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 148310 0.67 0.483272
Target:  5'- gCGUGcGCGCCGGUGuUCGUaugGuCUGAGGUUg -3'
miRNA:   3'- -GCGC-CGCGGCCGC-GGCG---C-GAUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 146942 0.67 0.501523
Target:  5'- uCGUGGCGCagaGGCuggaUgGCGCUGAGGc- -3'
miRNA:   3'- -GCGCCGCGg--CCGc---GgCGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 146752 0.7 0.350769
Target:  5'- gGCGGCGgacCCGGCaacagcaagcGCCGCGCggcGGUUc -3'
miRNA:   3'- gCGCCGC---GGCCG----------CGGCGCGauuCCAA- -5'
24363 3' -63.9 NC_005264.1 + 142696 0.67 0.474267
Target:  5'- --gGGCGCCGGCGgCGCGCc------ -3'
miRNA:   3'- gcgCCGCGGCCGCgGCGCGauuccaa -5'
24363 3' -63.9 NC_005264.1 + 139118 0.7 0.336121
Target:  5'- aGCGGCGgCGuGUGCCcuuuggGCGUUGAGGg- -3'
miRNA:   3'- gCGCCGCgGC-CGCGG------CGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 137286 0.69 0.397374
Target:  5'- cCGCGGCGuuGGCGgCGaCGC--GGGc- -3'
miRNA:   3'- -GCGCCGCggCCGCgGC-GCGauUCCaa -5'
24363 3' -63.9 NC_005264.1 + 136473 0.67 0.474267
Target:  5'- aGaCGGCGCCGcGCagccuGCCGCGgcgcacaagaCUAAGGUc -3'
miRNA:   3'- gC-GCCGCGGC-CG-----CGGCGC----------GAUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 136367 0.67 0.465347
Target:  5'- gGCGcUGCCGGCGCgaauaGCGCUGuGGa- -3'
miRNA:   3'- gCGCcGCGGCCGCGg----CGCGAUuCCaa -5'
24363 3' -63.9 NC_005264.1 + 136337 0.66 0.577139
Target:  5'- cCGCGGCGUagaagcugguuCGGCGCCGCaC--GGGc- -3'
miRNA:   3'- -GCGCCGCG-----------GCCGCGGCGcGauUCCaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.