miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 3' -63.9 NC_005264.1 + 93168 0.68 0.430575
Target:  5'- uCGgGGCGCCgcuccagacugGGCGgaGCaGCUGAGGUa -3'
miRNA:   3'- -GCgCCGCGG-----------CCGCggCG-CGAUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 69671 0.68 0.430575
Target:  5'- aCGCGGCGCUGGgGCCuugguucuccGCGgUugcguccugGAGGUUc -3'
miRNA:   3'- -GCGCCGCGGCCgCGG----------CGCgA---------UUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 25540 0.68 0.430575
Target:  5'- gGCGGCGCggacaaGGCGCuuguCGCGCUcguccAGGGg- -3'
miRNA:   3'- gCGCCGCGg-----CCGCG----GCGCGA-----UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 50587 0.68 0.430575
Target:  5'- aCGCGGCGCUGaGCaGCCcgGCGCUGGa--- -3'
miRNA:   3'- -GCGCCGCGGC-CG-CGG--CGCGAUUccaa -5'
24363 3' -63.9 NC_005264.1 + 42068 0.68 0.422122
Target:  5'- cCGCGGCGCgUGGCgucaGCUGCGCc-GGGa- -3'
miRNA:   3'- -GCGCCGCG-GCCG----CGGCGCGauUCCaa -5'
24363 3' -63.9 NC_005264.1 + 118058 0.68 0.421282
Target:  5'- cCGCGGCGUCGGCaacgaucGCCGCGggcacCUuuGGg- -3'
miRNA:   3'- -GCGCCGCGGCCG-------CGGCGC-----GAuuCCaa -5'
24363 3' -63.9 NC_005264.1 + 131717 0.68 0.421282
Target:  5'- gCGCGGCguuGCUGGCGCUcuggcgcuacaauGCGCUAcGGc- -3'
miRNA:   3'- -GCGCCG---CGGCCGCGG-------------CGCGAUuCCaa -5'
24363 3' -63.9 NC_005264.1 + 3460 0.68 0.41377
Target:  5'- cCGUGGCGcCCGGUGCCGCauccacgaugugGCacgcgucgugGAGGUUu -3'
miRNA:   3'- -GCGCCGC-GGCCGCGGCG------------CGa---------UUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 76350 0.68 0.41377
Target:  5'- gCGCGGCGaCUGcGCGCagGCGCguuGGUa -3'
miRNA:   3'- -GCGCCGC-GGC-CGCGg-CGCGauuCCAa -5'
24363 3' -63.9 NC_005264.1 + 52158 0.68 0.41294
Target:  5'- cCGUGGCGUuucagguagcucuCGGCGCUccugauaaauGUGCUGAGGg- -3'
miRNA:   3'- -GCGCCGCG-------------GCCGCGG----------CGCGAUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 68171 0.69 0.408807
Target:  5'- uGCGGCGCC--CGCCGCgGCUAcguuugggcuugguuAGGUa -3'
miRNA:   3'- gCGCCGCGGccGCGGCG-CGAU---------------UCCAa -5'
24363 3' -63.9 NC_005264.1 + 69056 0.69 0.40552
Target:  5'- cCGCGGcCGCCGGgcaggucaucguCGUCGCGCaccgcAAGGUc -3'
miRNA:   3'- -GCGCC-GCGGCC------------GCGGCGCGa----UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 58368 0.69 0.40552
Target:  5'- gGCGGgGCCGGCGCgauaUGCGCc--GGa- -3'
miRNA:   3'- gCGCCgCGGCCGCG----GCGCGauuCCaa -5'
24363 3' -63.9 NC_005264.1 + 51094 0.69 0.40552
Target:  5'- uCGCGGuCGCCGGUGCUGCGg------- -3'
miRNA:   3'- -GCGCC-GCGGCCGCGGCGCgauuccaa -5'
24363 3' -63.9 NC_005264.1 + 127842 0.69 0.40552
Target:  5'- cCGCGGCgGCCGGCggucuagaacccGgCGCGCgaaUGGGGUc -3'
miRNA:   3'- -GCGCCG-CGGCCG------------CgGCGCG---AUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 113256 0.69 0.397374
Target:  5'- -cUGGuCGCCGGCGgCGUGCgccgagAAGGUg -3'
miRNA:   3'- gcGCC-GCGGCCGCgGCGCGa-----UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 137286 0.69 0.397374
Target:  5'- cCGCGGCGuuGGCGgCGaCGC--GGGc- -3'
miRNA:   3'- -GCGCCGCggCCGCgGC-GCGauUCCaa -5'
24363 3' -63.9 NC_005264.1 + 104532 0.69 0.389335
Target:  5'- uCGCGGgcaGCCGGCGaaGCGCgccaucaGAGGa- -3'
miRNA:   3'- -GCGCCg--CGGCCGCggCGCGa------UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 127348 0.69 0.381403
Target:  5'- cCGCGGCGUCGcCGUCGUcccCUAGGGUUu -3'
miRNA:   3'- -GCGCCGCGGCcGCGGCGc--GAUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 59698 0.69 0.381403
Target:  5'- aCGCuuuGCGCCGcGCGCCGCGCcGGcGGc- -3'
miRNA:   3'- -GCGc--CGCGGC-CGCGGCGCGaUU-CCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.