miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 5' -47.5 NC_005264.1 + 140776 0.66 0.999249
Target:  5'- --cGCCUUCc-GGCGGCGGCgcuaccguccaaGGCg -3'
miRNA:   3'- aauUGGAAGuaUCGUCGCCGaaa---------UCG- -5'
24363 5' -47.5 NC_005264.1 + 118506 0.66 0.999181
Target:  5'- --cACCUcCAUAGuCGGCGGUUcu-GCg -3'
miRNA:   3'- aauUGGAaGUAUC-GUCGCCGAaauCG- -5'
24363 5' -47.5 NC_005264.1 + 96265 0.66 0.999181
Target:  5'- -gAGCCUguacCAgcaGGUGGCGGCgg-AGCu -3'
miRNA:   3'- aaUUGGAa---GUa--UCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 9542 0.67 0.998989
Target:  5'- --uGCCUUUGUcgcucgcagccGGUGGCGGCU--AGCa -3'
miRNA:   3'- aauUGGAAGUA-----------UCGUCGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 30399 0.67 0.998989
Target:  5'- -aGGCCUUgacgccggcgagCGUAGCGuuguacagccGCGGCUUgUAGCu -3'
miRNA:   3'- aaUUGGAA------------GUAUCGU----------CGCCGAA-AUCG- -5'
24363 5' -47.5 NC_005264.1 + 97530 0.67 0.998989
Target:  5'- -cGGCUguggCGUGGCAGCgGGCaagAGCc -3'
miRNA:   3'- aaUUGGaa--GUAUCGUCG-CCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 16868 0.67 0.998989
Target:  5'- gUUGACCUUgucGGCGGCGGCa----- -3'
miRNA:   3'- -AAUUGGAAguaUCGUCGCCGaaaucg -5'
24363 5' -47.5 NC_005264.1 + 55542 0.67 0.998759
Target:  5'- -aAGCCUagGUAGCAGgugGGCUUcgUAGUu -3'
miRNA:   3'- aaUUGGAagUAUCGUCg--CCGAA--AUCG- -5'
24363 5' -47.5 NC_005264.1 + 62593 0.67 0.998601
Target:  5'- aUUGACCgcgCGaAGUAGCGGCgcggacguuccgAGCa -3'
miRNA:   3'- -AAUUGGaa-GUaUCGUCGCCGaaa---------UCG- -5'
24363 5' -47.5 NC_005264.1 + 48389 0.67 0.998487
Target:  5'- -aGACUggggCGUcgGGCGGCGGCcaggAGCg -3'
miRNA:   3'- aaUUGGaa--GUA--UCGUCGCCGaaa-UCG- -5'
24363 5' -47.5 NC_005264.1 + 134841 0.67 0.998487
Target:  5'- -cGACCUggaUCGaugGGCcGCGGCUacGGCg -3'
miRNA:   3'- aaUUGGA---AGUa--UCGuCGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 3984 0.67 0.998487
Target:  5'- gUUAGCCgcuucGGCGGCGGCg--GGUu -3'
miRNA:   3'- -AAUUGGaaguaUCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 96448 0.67 0.998487
Target:  5'- -cAACCUUg--AGCcuAGCGGCUUccAGCg -3'
miRNA:   3'- aaUUGGAAguaUCG--UCGCCGAAa-UCG- -5'
24363 5' -47.5 NC_005264.1 + 142213 0.67 0.998165
Target:  5'- gUAAUCUcgCGaGGCAGCGGUUgggucAGCa -3'
miRNA:   3'- aAUUGGAa-GUaUCGUCGCCGAaa---UCG- -5'
24363 5' -47.5 NC_005264.1 + 145968 0.67 0.998165
Target:  5'- -cGACCUUCGccggcgcgaaUAcgaacugcGCGGCGGCU--GGCg -3'
miRNA:   3'- aaUUGGAAGU----------AU--------CGUCGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 138591 0.67 0.998165
Target:  5'- gUUGACUUcCGcGGCAGCGGUgg-GGUg -3'
miRNA:   3'- -AAUUGGAaGUaUCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 93579 0.67 0.998165
Target:  5'- --cGCCc-CAUGGCAGCGGaugaGGCg -3'
miRNA:   3'- aauUGGaaGUAUCGUCGCCgaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 103709 0.68 0.997788
Target:  5'- -gGGCCaguggAGCGGCGGCgc-GGCa -3'
miRNA:   3'- aaUUGGaaguaUCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 32682 0.68 0.997788
Target:  5'- -gAACUcUgGUGGCGGCcaGGCuUUUAGCg -3'
miRNA:   3'- aaUUGGaAgUAUCGUCG--CCG-AAAUCG- -5'
24363 5' -47.5 NC_005264.1 + 129231 0.68 0.997788
Target:  5'- cUGGCCgaacuuUAGCGGCGGCa--AGCc -3'
miRNA:   3'- aAUUGGaagu--AUCGUCGCCGaaaUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.