miRNA display CGI


Results 21 - 40 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 3' -56.7 NC_005264.1 + 154890 0.7 0.681114
Target:  5'- -cAGCGACaaagacgccGCGGCCGuggaCGACGCGUGGa -3'
miRNA:   3'- uuUCGCUG---------UGCUGGUg---GCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 154116 0.71 0.639543
Target:  5'- gGGGGCGAgCcgaaacgGCGGCCACgCG-CGCGCAGa -3'
miRNA:   3'- -UUUCGCU-G-------UGCUGGUG-GCuGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 151464 0.68 0.791253
Target:  5'- --cGCGACGCGGCCGCguucuuccgcaagaaCGACaggauaGCGCAa -3'
miRNA:   3'- uuuCGCUGUGCUGGUG---------------GCUG------CGCGUc -5'
24364 3' -56.7 NC_005264.1 + 150995 0.69 0.740568
Target:  5'- -cGGCGACG-GGCCGcguguCCGAUGCGCGc -3'
miRNA:   3'- uuUCGCUGUgCUGGU-----GGCUGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 150848 0.69 0.740568
Target:  5'- --cGUGACGCGuacuCUGCCGugccGCGCGCGGc -3'
miRNA:   3'- uuuCGCUGUGCu---GGUGGC----UGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 150577 0.7 0.671014
Target:  5'- gGGGGCGG-ACGGCCAuucCCGACGUGgAGg -3'
miRNA:   3'- -UUUCGCUgUGCUGGU---GGCUGCGCgUC- -5'
24364 3' -56.7 NC_005264.1 + 149645 0.68 0.769154
Target:  5'- -cGGCGGCgGCGACgGauCCG-CGCGCAGc -3'
miRNA:   3'- uuUCGCUG-UGCUGgU--GGCuGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 148654 0.7 0.701186
Target:  5'- uGGGGCGACgGCGaucGCCACCGAgGCG-AGa -3'
miRNA:   3'- -UUUCGCUG-UGC---UGGUGGCUgCGCgUC- -5'
24364 3' -56.7 NC_005264.1 + 147555 0.76 0.36793
Target:  5'- --cGCGGCGCGaagugGCCGCCGACGUGUg- -3'
miRNA:   3'- uuuCGCUGUGC-----UGGUGGCUGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 145601 0.76 0.344412
Target:  5'- uGAAGCGACcgACGAUUACaaGGCGCGCAGg -3'
miRNA:   3'- -UUUCGCUG--UGCUGGUGg-CUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 145322 0.68 0.814269
Target:  5'- cGAAGa-GCACGACCGuCUGACGCGgAa -3'
miRNA:   3'- -UUUCgcUGUGCUGGU-GGCUGCGCgUc -5'
24364 3' -56.7 NC_005264.1 + 142540 0.67 0.831229
Target:  5'- -cAGCGACcucagccccucGgGGCCGCaaGCGCGCAGa -3'
miRNA:   3'- uuUCGCUG-----------UgCUGGUGgcUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 142175 0.69 0.759734
Target:  5'- -uAGCG-CGCGAuugaaaucuuCCACCGACGCGg-- -3'
miRNA:   3'- uuUCGCuGUGCU----------GGUGGCUGCGCguc -5'
24364 3' -56.7 NC_005264.1 + 141154 0.66 0.876883
Target:  5'- cGAGGCGGCacaaucgGCGACCucaauuuCCGAUGCGg-- -3'
miRNA:   3'- -UUUCGCUG-------UGCUGGu------GGCUGCGCguc -5'
24364 3' -56.7 NC_005264.1 + 140603 0.73 0.510394
Target:  5'- aGAGGCGACcgcccaGACCGCCGACGagGCGa -3'
miRNA:   3'- -UUUCGCUGug----CUGGUGGCUGCg-CGUc -5'
24364 3' -56.7 NC_005264.1 + 138911 0.7 0.691174
Target:  5'- -cGGCGGCGCGACCagaaccGCCGACacaGUAGc -3'
miRNA:   3'- uuUCGCUGUGCUGG------UGGCUGcg-CGUC- -5'
24364 3' -56.7 NC_005264.1 + 138636 0.66 0.897937
Target:  5'- --cGCuGGCuuCGGCCACCGGCaccGCGcCAGa -3'
miRNA:   3'- uuuCG-CUGu-GCUGGUGGCUG---CGC-GUC- -5'
24364 3' -56.7 NC_005264.1 + 136108 0.71 0.599897
Target:  5'- uGAGCGACgACGACgAauaaCGACGCGgGGa -3'
miRNA:   3'- uUUCGCUG-UGCUGgUg---GCUGCGCgUC- -5'
24364 3' -56.7 NC_005264.1 + 136029 0.7 0.715104
Target:  5'- aAGAGCGGCGCGGCCcacuucuccucguggAagcCCG-CGUGCAGg -3'
miRNA:   3'- -UUUCGCUGUGCUGG---------------U---GGCuGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 135840 0.66 0.897937
Target:  5'- gAAAGCGAgaAUGGCUACCcGCGUGCc- -3'
miRNA:   3'- -UUUCGCUg-UGCUGGUGGcUGCGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.