miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 3' -56.7 NC_005264.1 + 162747 0.71 0.650729
Target:  5'- cGAGCGGCccGCGugCGCCGAUaaGUGCGa -3'
miRNA:   3'- uUUCGCUG--UGCugGUGGCUG--CGCGUc -5'
24364 3' -56.7 NC_005264.1 + 162707 0.66 0.89138
Target:  5'- -cGGCGuuaAgGCGGCCGCCGGgGaGCGGg -3'
miRNA:   3'- uuUCGC---UgUGCUGGUGGCUgCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 162595 0.67 0.839445
Target:  5'- cGAGCGGCcCGcCuCGCUGugGCGcCAGg -3'
miRNA:   3'- uUUCGCUGuGCuG-GUGGCugCGC-GUC- -5'
24364 3' -56.7 NC_005264.1 + 162442 0.66 0.883908
Target:  5'- --cGCGAacagguaCACGACCgcGCCGGCGCuGCc- -3'
miRNA:   3'- uuuCGCU-------GUGCUGG--UGGCUGCG-CGuc -5'
24364 3' -56.7 NC_005264.1 + 162224 0.66 0.884599
Target:  5'- --uGCGACGCGG--GCCGGCGgGgGGg -3'
miRNA:   3'- uuuCGCUGUGCUggUGGCUGCgCgUC- -5'
24364 3' -56.7 NC_005264.1 + 159509 0.68 0.772889
Target:  5'- --uGUGGCGCGACUacucucgcuccgcuuGCaCGGCGCGCGa -3'
miRNA:   3'- uuuCGCUGUGCUGG---------------UG-GCUGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 159286 0.72 0.578669
Target:  5'- gGAAGUGGCACGagagaugcuggacGCCGCCG-CGuCGCGGu -3'
miRNA:   3'- -UUUCGCUGUGC-------------UGGUGGCuGC-GCGUC- -5'
24364 3' -56.7 NC_005264.1 + 157823 0.66 0.870376
Target:  5'- -cGGUGACguacuccgcgGCGACC-CCGGCGCGgAc -3'
miRNA:   3'- uuUCGCUG----------UGCUGGuGGCUGCGCgUc -5'
24364 3' -56.7 NC_005264.1 + 157190 0.68 0.80554
Target:  5'- --uGCG-UGCGACUACCGcCGCGCu- -3'
miRNA:   3'- uuuCGCuGUGCUGGUGGCuGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 157014 0.7 0.71114
Target:  5'- cAGGCGAgugGCGGCCACCGcCGC-CGGa -3'
miRNA:   3'- uUUCGCUg--UGCUGGUGGCuGCGcGUC- -5'
24364 3' -56.7 NC_005264.1 + 156929 0.66 0.870376
Target:  5'- -uAGCGccuCGCGAgucuCCGCCGAgGCGUAc -3'
miRNA:   3'- uuUCGCu--GUGCU----GGUGGCUgCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 156673 0.7 0.671014
Target:  5'- -cGGCGugccccACACGugCACgCGAUGCGCGa -3'
miRNA:   3'- uuUCGC------UGUGCugGUG-GCUGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 156586 0.66 0.89138
Target:  5'- -cGGCGGCgACGACCG-CGACGgagGCGGc -3'
miRNA:   3'- uuUCGCUG-UGCUGGUgGCUGCg--CGUC- -5'
24364 3' -56.7 NC_005264.1 + 156469 0.66 0.89138
Target:  5'- cGAGCGGCugG-UCGCCGAguucaUGCuGCAGc -3'
miRNA:   3'- uUUCGCUGugCuGGUGGCU-----GCG-CGUC- -5'
24364 3' -56.7 NC_005264.1 + 156186 0.7 0.660883
Target:  5'- -cGGCGugGCGG-CGCCGGCuauaugucgggGCGCAGg -3'
miRNA:   3'- uuUCGCugUGCUgGUGGCUG-----------CGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 156149 0.7 0.688161
Target:  5'- gAGGGCGAgGCGGCCgucucggccucgcuGCUGGCGC-CAGg -3'
miRNA:   3'- -UUUCGCUgUGCUGG--------------UGGCUGCGcGUC- -5'
24364 3' -56.7 NC_005264.1 + 155776 0.68 0.778454
Target:  5'- --cGCGACGgcgcCGGCCggcGCCGucgccgcuuGCGCGCAGa -3'
miRNA:   3'- uuuCGCUGU----GCUGG---UGGC---------UGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 155221 0.71 0.620211
Target:  5'- uGGGCGAaagaGCaGACCGCauGCGCGCAGa -3'
miRNA:   3'- uUUCGCUg---UG-CUGGUGgcUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 155083 0.7 0.691174
Target:  5'- -cAGUGcC-CGACUGCCGACGCGgAGa -3'
miRNA:   3'- uuUCGCuGuGCUGGUGGCUGCGCgUC- -5'
24364 3' -56.7 NC_005264.1 + 154949 0.67 0.831229
Target:  5'- -cGGCGAgGaGACCuCCGACGcCGCAu -3'
miRNA:   3'- uuUCGCUgUgCUGGuGGCUGC-GCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.