miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 3' -56.7 NC_005264.1 + 156586 0.66 0.89138
Target:  5'- -cGGCGGCgACGACCG-CGACGgagGCGGc -3'
miRNA:   3'- uuUCGCUG-UGCUGGUgGCUGCg--CGUC- -5'
24364 3' -56.7 NC_005264.1 + 37805 0.66 0.89138
Target:  5'- aGAAGaGGCGCG-CCGCCGACGaguuuGCGa -3'
miRNA:   3'- -UUUCgCUGUGCuGGUGGCUGCg----CGUc -5'
24364 3' -56.7 NC_005264.1 + 114297 0.66 0.897937
Target:  5'- gAAGGCGACGgGGgCGCgcggGACGaCGCGGa -3'
miRNA:   3'- -UUUCGCUGUgCUgGUGg---CUGC-GCGUC- -5'
24364 3' -56.7 NC_005264.1 + 141154 0.66 0.876883
Target:  5'- cGAGGCGGCacaaucgGCGACCucaauuuCCGAUGCGg-- -3'
miRNA:   3'- -UUUCGCUG-------UGCUGGu------GGCUGCGCguc -5'
24364 3' -56.7 NC_005264.1 + 106306 0.66 0.89138
Target:  5'- --cGcCGGCACcaucaccuguGCCGCCGGCGCGCc- -3'
miRNA:   3'- uuuC-GCUGUGc---------UGGUGGCUGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 93488 0.66 0.870376
Target:  5'- uGAGGCGcUGCuGGCgGCCGGCGCGUc- -3'
miRNA:   3'- -UUUCGCuGUG-CUGgUGGCUGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 79431 0.66 0.870376
Target:  5'- ---aCGAUucucaACGACC-CgCGGCGCGCAGa -3'
miRNA:   3'- uuucGCUG-----UGCUGGuG-GCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 20137 0.66 0.897937
Target:  5'- uGGGC--CGCGGCuCACCG-CGCGCAa -3'
miRNA:   3'- uUUCGcuGUGCUG-GUGGCuGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 162707 0.66 0.89138
Target:  5'- -cGGCGuuaAgGCGGCCGCCGGgGaGCGGg -3'
miRNA:   3'- uuUCGC---UgUGCUGGUGGCUgCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 93797 0.66 0.876883
Target:  5'- -cGGCGGcCGCGGCCaagagaucgacucGCCGugGCaCAGu -3'
miRNA:   3'- uuUCGCU-GUGCUGG-------------UGGCugCGcGUC- -5'
24364 3' -56.7 NC_005264.1 + 56074 0.66 0.870376
Target:  5'- --uGCGACGC--CCGCUGACGcCGCGu -3'
miRNA:   3'- uuuCGCUGUGcuGGUGGCUGC-GCGUc -5'
24364 3' -56.7 NC_005264.1 + 17371 0.66 0.884599
Target:  5'- -cGGCGGCGCGGUCugUGuACGUGCGc -3'
miRNA:   3'- uuUCGCUGUGCUGGugGC-UGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 125021 0.66 0.870376
Target:  5'- cAAGGgGAguCGuCGGCC-CCGACGgGCGGg -3'
miRNA:   3'- -UUUCgCU--GU-GCUGGuGGCUGCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 156469 0.66 0.89138
Target:  5'- cGAGCGGCugG-UCGCCGAguucaUGCuGCAGc -3'
miRNA:   3'- uUUCGCUGugCuGGUGGCU-----GCG-CGUC- -5'
24364 3' -56.7 NC_005264.1 + 131233 0.66 0.884599
Target:  5'- cAGGGCGAUGCGcGCCGCCu-CGC-CAGa -3'
miRNA:   3'- -UUUCGCUGUGC-UGGUGGcuGCGcGUC- -5'
24364 3' -56.7 NC_005264.1 + 157823 0.66 0.870376
Target:  5'- -cGGUGACguacuccgcgGCGACC-CCGGCGCGgAc -3'
miRNA:   3'- uuUCGCUG----------UGCUGGuGGCUGCGCgUc -5'
24364 3' -56.7 NC_005264.1 + 68980 0.66 0.869643
Target:  5'- ---aCGGCACGAcuacCCGCCGcauuauuGCGCGCAc -3'
miRNA:   3'- uuucGCUGUGCU----GGUGGC-------UGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 123082 0.66 0.870376
Target:  5'- uGGGCGACGgGAUCucCCGACaGCGgGGc -3'
miRNA:   3'- uUUCGCUGUgCUGGu-GGCUG-CGCgUC- -5'
24364 3' -56.7 NC_005264.1 + 162224 0.66 0.884599
Target:  5'- --uGCGACGCGG--GCCGGCGgGgGGg -3'
miRNA:   3'- uuuCGCUGUGCUggUGGCUGCgCgUC- -5'
24364 3' -56.7 NC_005264.1 + 125493 0.66 0.897937
Target:  5'- -cGGCGGCGCGGCgAacgUCGGggUGCGCGGc -3'
miRNA:   3'- uuUCGCUGUGCUGgU---GGCU--GCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.