miRNA display CGI


Results 1 - 20 of 256 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 3' -56.7 NC_005264.1 + 134891 1.07 0.003719
Target:  5'- cAAAGCGACACGACCACCGACGCGCAGa -3'
miRNA:   3'- -UUUCGCUGUGCUGGUGGCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 54365 0.83 0.13721
Target:  5'- aGAAGCGucGCGCGGCCACCGGaucccCGCGCGGa -3'
miRNA:   3'- -UUUCGC--UGUGCUGGUGGCU-----GCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 128089 0.79 0.237555
Target:  5'- -uAGCGACAgCGGCgACCGGCGCGcCGGg -3'
miRNA:   3'- uuUCGCUGU-GCUGgUGGCUGCGC-GUC- -5'
24364 3' -56.7 NC_005264.1 + 76654 0.78 0.293827
Target:  5'- cGAGGcCGAUGCGGCCACCGGUGCgGCAGa -3'
miRNA:   3'- -UUUC-GCUGUGCUGGUGGCUGCG-CGUC- -5'
24364 3' -56.7 NC_005264.1 + 67893 0.78 0.293827
Target:  5'- --cGCGAgGCccACCACCGACGCGUAGa -3'
miRNA:   3'- uuuCGCUgUGc-UGGUGGCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 12964 0.77 0.336816
Target:  5'- cGGGCGGCGCGcGCCGCCGACGacgaCGCGa -3'
miRNA:   3'- uUUCGCUGUGC-UGGUGGCUGC----GCGUc -5'
24364 3' -56.7 NC_005264.1 + 145601 0.76 0.344412
Target:  5'- uGAAGCGACcgACGAUUACaaGGCGCGCAGg -3'
miRNA:   3'- -UUUCGCUG--UGCUGGUGg-CUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 147555 0.76 0.36793
Target:  5'- --cGCGGCGCGaagugGCCGCCGACGUGUg- -3'
miRNA:   3'- uuuCGCUGUGC-----UGGUGGCUGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 131990 0.76 0.376011
Target:  5'- cGGGCGGCGCGccGCCGCCGACGacgaCGCGa -3'
miRNA:   3'- uUUCGCUGUGC--UGGUGGCUGC----GCGUc -5'
24364 3' -56.7 NC_005264.1 + 83538 0.76 0.38421
Target:  5'- cGAGCGACAUGACC-CCGcACGCgGCGa -3'
miRNA:   3'- uUUCGCUGUGCUGGuGGC-UGCG-CGUc -5'
24364 3' -56.7 NC_005264.1 + 133422 0.75 0.400961
Target:  5'- -cAGUGACAUGACCuccuCCGAUGCgGCGGu -3'
miRNA:   3'- uuUCGCUGUGCUGGu---GGCUGCG-CGUC- -5'
24364 3' -56.7 NC_005264.1 + 36558 0.75 0.41817
Target:  5'- gAAAGCGGCAUGGCCGCCucCGCGgAc -3'
miRNA:   3'- -UUUCGCUGUGCUGGUGGcuGCGCgUc -5'
24364 3' -56.7 NC_005264.1 + 72891 0.75 0.41817
Target:  5'- --cGCGccaGCGGCCGCCGAUGgGCGGa -3'
miRNA:   3'- uuuCGCug-UGCUGGUGGCUGCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 130553 0.74 0.453893
Target:  5'- --cGCGGCGCGugUGCU-ACGCGCAGg -3'
miRNA:   3'- uuuCGCUGUGCugGUGGcUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 119211 0.74 0.453893
Target:  5'- cGAGCGuaacGCGCGACCACgcgagguuUGGCGCGCAa -3'
miRNA:   3'- uUUCGC----UGUGCUGGUG--------GCUGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 53576 0.74 0.466783
Target:  5'- cAGAGCGGCGCGGCUugCGuuuuguggcacagcaGCGCGUAa -3'
miRNA:   3'- -UUUCGCUGUGCUGGugGC---------------UGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 18391 0.74 0.472365
Target:  5'- cAGGCGGacaACGACCACCGuuccggccgGCGCAGg -3'
miRNA:   3'- uUUCGCUg--UGCUGGUGGCug-------CGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 140603 0.73 0.510394
Target:  5'- aGAGGCGACcgcccaGACCGCCGACGagGCGa -3'
miRNA:   3'- -UUUCGCUGug----CUGGUGGCUGCg-CGUc -5'
24364 3' -56.7 NC_005264.1 + 137 0.73 0.520104
Target:  5'- -cGGCGGC-CGccuuaaCGCCGGCGCGCAGc -3'
miRNA:   3'- uuUCGCUGuGCug----GUGGCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 57877 0.73 0.520104
Target:  5'- -cGGCGGCACGGCgGCCaugGCGCGGa -3'
miRNA:   3'- uuUCGCUGUGCUGgUGGcugCGCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.