miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 3' -56.7 NC_005264.1 + 136108 0.71 0.599897
Target:  5'- uGAGCGACgACGACgAauaaCGACGCGgGGa -3'
miRNA:   3'- uUUCGCUG-UGCUGgUg---GCUGCGCgUC- -5'
24364 3' -56.7 NC_005264.1 + 125856 0.72 0.559605
Target:  5'- gGAGGCGGCgGCGACUauggcGCCaGCGCGCAa -3'
miRNA:   3'- -UUUCGCUG-UGCUGG-----UGGcUGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 605 0.72 0.569619
Target:  5'- -cAGCGAgGCGACUACgGugGCGUu- -3'
miRNA:   3'- uuUCGCUgUGCUGGUGgCugCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 13617 0.72 0.569619
Target:  5'- -cAGCGACAgUGACCGCUGGCGCa--- -3'
miRNA:   3'- uuUCGCUGU-GCUGGUGGCUGCGcguc -5'
24364 3' -56.7 NC_005264.1 + 59996 0.72 0.569619
Target:  5'- cGAGCGAgACGGCCGCgUGGC-CGCGGc -3'
miRNA:   3'- uUUCGCUgUGCUGGUG-GCUGcGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 159286 0.72 0.578669
Target:  5'- gGAAGUGGCACGagagaugcuggacGCCGCCG-CGuCGCGGu -3'
miRNA:   3'- -UUUCGCUGUGC-------------UGGUGGCuGC-GCGUC- -5'
24364 3' -56.7 NC_005264.1 + 56317 0.72 0.579677
Target:  5'- --cGCGGcCGCGcuGCCGCCGuCGCGCAc -3'
miRNA:   3'- uuuCGCU-GUGC--UGGUGGCuGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 132448 0.72 0.579677
Target:  5'- -cGGCG-CGCGACCGCCGccgccgagacGCGaCGCGGc -3'
miRNA:   3'- uuUCGCuGUGCUGGUGGC----------UGC-GCGUC- -5'
24364 3' -56.7 NC_005264.1 + 76345 0.72 0.589772
Target:  5'- -uGGCcGCGCGGCgACUG-CGCGCAGg -3'
miRNA:   3'- uuUCGcUGUGCUGgUGGCuGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 108706 0.72 0.559605
Target:  5'- -uAGuCGGCAcCGACC-CCGGCGCGCu- -3'
miRNA:   3'- uuUC-GCUGU-GCUGGuGGCUGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 119164 0.73 0.520104
Target:  5'- -cGGCGGC-CGccuuaaCGCCGGCGCGCAGc -3'
miRNA:   3'- uuUCGCUGuGCug----GUGGCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 140603 0.73 0.510394
Target:  5'- aGAGGCGACcgcccaGACCGCCGACGagGCGa -3'
miRNA:   3'- -UUUCGCUGug----CUGGUGGCUGCg-CGUc -5'
24364 3' -56.7 NC_005264.1 + 67893 0.78 0.293827
Target:  5'- --cGCGAgGCccACCACCGACGCGUAGa -3'
miRNA:   3'- uuuCGCUgUGc-UGGUGGCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 76654 0.78 0.293827
Target:  5'- cGAGGcCGAUGCGGCCACCGGUGCgGCAGa -3'
miRNA:   3'- -UUUC-GCUGUGCUGGUGGCUGCG-CGUC- -5'
24364 3' -56.7 NC_005264.1 + 147555 0.76 0.36793
Target:  5'- --cGCGGCGCGaagugGCCGCCGACGUGUg- -3'
miRNA:   3'- uuuCGCUGUGC-----UGGUGGCUGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 131990 0.76 0.376011
Target:  5'- cGGGCGGCGCGccGCCGCCGACGacgaCGCGa -3'
miRNA:   3'- uUUCGCUGUGC--UGGUGGCUGC----GCGUc -5'
24364 3' -56.7 NC_005264.1 + 133422 0.75 0.400961
Target:  5'- -cAGUGACAUGACCuccuCCGAUGCgGCGGu -3'
miRNA:   3'- uuUCGCUGUGCUGGu---GGCUGCG-CGUC- -5'
24364 3' -56.7 NC_005264.1 + 36558 0.75 0.41817
Target:  5'- gAAAGCGGCAUGGCCGCCucCGCGgAc -3'
miRNA:   3'- -UUUCGCUGUGCUGGUGGcuGCGCgUc -5'
24364 3' -56.7 NC_005264.1 + 53576 0.74 0.466783
Target:  5'- cAGAGCGGCGCGGCUugCGuuuuguggcacagcaGCGCGUAa -3'
miRNA:   3'- -UUUCGCUGUGCUGGugGC---------------UGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 18391 0.74 0.472365
Target:  5'- cAGGCGGacaACGACCACCGuuccggccgGCGCAGg -3'
miRNA:   3'- uUUCGCUg--UGCUGGUGGCug-------CGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.