Results 1 - 20 of 256 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24364 | 3' | -56.7 | NC_005264.1 | + | 56501 | 0.66 | 0.900496 |
Target: 5'- cAAGCGGCAgucagaaaauaucauCGGCgCGCCGGCG-GCAc -3' miRNA: 3'- uUUCGCUGU---------------GCUG-GUGGCUGCgCGUc -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 45323 | 0.66 | 0.89138 |
Target: 5'- uAGGgGA-GCGACCGCaGACGCGCc- -3' miRNA: 3'- uUUCgCUgUGCUGGUGgCUGCGCGuc -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 128975 | 0.66 | 0.884599 |
Target: 5'- cGAGCGGacgcucCACGuucuucagcucuGCCG-CGGCGCGCAGg -3' miRNA: 3'- uUUCGCU------GUGC------------UGGUgGCUGCGCGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 134891 | 1.07 | 0.003719 |
Target: 5'- cAAAGCGACACGACCACCGACGCGCAGa -3' miRNA: 3'- -UUUCGCUGUGCUGGUGGCUGCGCGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 138636 | 0.66 | 0.897937 |
Target: 5'- --cGCuGGCuuCGGCCACCGGCaccGCGcCAGa -3' miRNA: 3'- uuuCG-CUGu-GCUGGUGGCUG---CGC-GUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 91031 | 0.66 | 0.897937 |
Target: 5'- cGGGCGGCuuCGGCCGCU-AUGCGgAGg -3' miRNA: 3'- uUUCGCUGu-GCUGGUGGcUGCGCgUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 75393 | 0.66 | 0.897937 |
Target: 5'- -uGGUG-CGCG-CCACCGucUGCGCGGc -3' miRNA: 3'- uuUCGCuGUGCuGGUGGCu-GCGCGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 14354 | 0.66 | 0.895341 |
Target: 5'- --cGCGACcaGCGcgucccauagucuaGCCGCCGAcgaaacgguucguCGCGCAGc -3' miRNA: 3'- uuuCGCUG--UGC--------------UGGUGGCU-------------GCGCGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 105656 | 0.66 | 0.89138 |
Target: 5'- cGGGCGGCGCu-UUGCCGGCG-GCAGa -3' miRNA: 3'- uUUCGCUGUGcuGGUGGCUGCgCGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 37442 | 0.66 | 0.89138 |
Target: 5'- cGAGCGGCugG-UCGCCGAguucaUGCuGCAGc -3' miRNA: 3'- uUUCGCUGugCuGGUGGCU-----GCG-CGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 68428 | 0.66 | 0.89138 |
Target: 5'- -cAGCGAuCGCGcaguccgcGCCGCgGucuGCGCGCGGa -3' miRNA: 3'- uuUCGCU-GUGC--------UGGUGgC---UGCGCGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 129523 | 0.66 | 0.89138 |
Target: 5'- gGAGGCGACGgaACCACUGcGgGCGUGGg -3' miRNA: 3'- -UUUCGCUGUgcUGGUGGC-UgCGCGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 135840 | 0.66 | 0.897937 |
Target: 5'- gAAAGCGAgaAUGGCUACCcGCGUGCc- -3' miRNA: 3'- -UUUCGCUg-UGCUGGUGGcUGCGCGuc -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 43681 | 0.66 | 0.89138 |
Target: 5'- -cGGCGuuaAgGCGGCCGCCGGgGaGCGGg -3' miRNA: 3'- uuUCGC---UgUGCUGGUGGCUgCgCGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 106305 | 0.66 | 0.897937 |
Target: 5'- gAGAGCGACAg---CugCGGCGgGCAGg -3' miRNA: 3'- -UUUCGCUGUgcugGugGCUGCgCGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 65510 | 0.66 | 0.89138 |
Target: 5'- cGGAGUGAUcgGCGACCugcuuggcACCGGgGCGCc- -3' miRNA: 3'- -UUUCGCUG--UGCUGG--------UGGCUgCGCGuc -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 37559 | 0.66 | 0.89138 |
Target: 5'- -cGGCGGCgACGACCG-CGACGgagGCGGc -3' miRNA: 3'- uuUCGCUG-UGCUGGUgGCUGCg--CGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 123203 | 0.66 | 0.890712 |
Target: 5'- cGAGGCcGCGCGGCaaaaccacagCGCCGugucuaggagcaaGCGCGCAGc -3' miRNA: 3'- -UUUCGcUGUGCUG----------GUGGC-------------UGCGCGUC- -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 12779 | 0.66 | 0.897937 |
Target: 5'- -cAGCcGCACGACCGCUaGGCG-GCAc -3' miRNA: 3'- uuUCGcUGUGCUGGUGG-CUGCgCGUc -5' |
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24364 | 3' | -56.7 | NC_005264.1 | + | 6466 | 0.66 | 0.897937 |
Target: 5'- -cGGCGGCGCGGCgAacgUCGGggUGCGCGGc -3' miRNA: 3'- uuUCGCUGUGCUGgU---GGCU--GCGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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