miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 3' -56.7 NC_005264.1 + 137 0.73 0.520104
Target:  5'- -cGGCGGC-CGccuuaaCGCCGGCGCGCAGc -3'
miRNA:   3'- uuUCGCUGuGCug----GUGGCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 167 0.67 0.862946
Target:  5'- --cGcCGACcguacaccuACGACCucGCCGGCGCGCu- -3'
miRNA:   3'- uuuC-GCUG---------UGCUGG--UGGCUGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 605 0.72 0.569619
Target:  5'- -cAGCGAgGCGACUACgGugGCGUu- -3'
miRNA:   3'- uuUCGCUgUGCUGGUGgCugCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 1150 0.68 0.796655
Target:  5'- cGGGaCGAUcCGGCCgccagucuGCCGGCGCGCGa -3'
miRNA:   3'- uUUC-GCUGuGCUGG--------UGGCUGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 2870 0.71 0.620211
Target:  5'- --uGCGGCuGCGAUCgACCGGgGCGCGGc -3'
miRNA:   3'- uuuCGCUG-UGCUGG-UGGCUgCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 3152 0.67 0.847474
Target:  5'- uGGGCagGGCAaGACCACCGaACGCGUc- -3'
miRNA:   3'- uUUCG--CUGUgCUGGUGGC-UGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 3407 0.7 0.71114
Target:  5'- uGAGCGGaACGACCAUggaaggCGGCGCGCc- -3'
miRNA:   3'- uUUCGCUgUGCUGGUG------GCUGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 3473 0.69 0.740568
Target:  5'- gGGGGCGAUggGcuuGCCGCCGcACGCgGCGGg -3'
miRNA:   3'- -UUUCGCUGugC---UGGUGGC-UGCG-CGUC- -5'
24364 3' -56.7 NC_005264.1 + 3745 0.68 0.796655
Target:  5'- aGGAGCGGgGCcucuuGCCGCCGGgGCGCu- -3'
miRNA:   3'- -UUUCGCUgUGc----UGGUGGCUgCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 4055 0.66 0.870376
Target:  5'- uGGGCGACGgGAUCucCCGACaGCGgGGc -3'
miRNA:   3'- uUUCGCUGUgCUGGu-GGCUG-CGCgUC- -5'
24364 3' -56.7 NC_005264.1 + 5286 0.67 0.839445
Target:  5'- -cGGCGGgGCGGCgGCUGACcCGUGGg -3'
miRNA:   3'- uuUCGCUgUGCUGgUGGCUGcGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 5780 0.67 0.831229
Target:  5'- --cGCGACcguCGugcACCACCGAgGCGCc- -3'
miRNA:   3'- uuuCGCUGu--GC---UGGUGGCUgCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 5994 0.66 0.870376
Target:  5'- cAAGGgGAguCGuCGGCC-CCGACGgGCGGg -3'
miRNA:   3'- -UUUCgCU--GU-GCUGGuGGCUGCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 6411 0.69 0.750202
Target:  5'- cGAGGCGAuCACcGCCGCCaGC-CGCAGg -3'
miRNA:   3'- -UUUCGCU-GUGcUGGUGGcUGcGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 6466 0.66 0.897937
Target:  5'- -cGGCGGCGCGGCgAacgUCGGggUGCGCGGc -3'
miRNA:   3'- uuUCGCUGUGCUGgU---GGCU--GCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 6726 0.67 0.831229
Target:  5'- -uAGCGuCGCGGuacuCCGCggCGugGCGCGGg -3'
miRNA:   3'- uuUCGCuGUGCU----GGUG--GCugCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 6830 0.72 0.559605
Target:  5'- gGAGGCGGCgGCGACUauggcGCCaGCGCGCAa -3'
miRNA:   3'- -UUUCGCUG-UGCUGG-----UGGcUGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 7059 0.67 0.822835
Target:  5'- -cGGCGACGgcgcCGGCCggcGCCGuCGCGCu- -3'
miRNA:   3'- uuUCGCUGU----GCUGG---UGGCuGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 8216 0.67 0.831229
Target:  5'- -cGGaGACGCGGCCAUCGGCcgaagcCGCAGc -3'
miRNA:   3'- uuUCgCUGUGCUGGUGGCUGc-----GCGUC- -5'
24364 3' -56.7 NC_005264.1 + 8300 0.68 0.787624
Target:  5'- uGGGCGACGgGGgCACCuGCGcCGCGGc -3'
miRNA:   3'- uUUCGCUGUgCUgGUGGcUGC-GCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.