miRNA display CGI


Results 21 - 40 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 3' -56.7 NC_005264.1 + 106766 0.66 0.884599
Target:  5'- ----aGACGCGGCgucaGCgGGCGUGCAGa -3'
miRNA:   3'- uuucgCUGUGCUGg---UGgCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 128975 0.66 0.884599
Target:  5'- cGAGCGGacgcucCACGuucuucagcucuGCCG-CGGCGCGCAGg -3'
miRNA:   3'- uUUCGCU------GUGC------------UGGUgGCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 129523 0.66 0.89138
Target:  5'- gGAGGCGACGgaACCACUGcGgGCGUGGg -3'
miRNA:   3'- -UUUCGCUGUgcUGGUGGC-UgCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 12779 0.66 0.897937
Target:  5'- -cAGCcGCACGACCGCUaGGCG-GCAc -3'
miRNA:   3'- uuUCGcUGUGCUGGUGG-CUGCgCGUc -5'
24364 3' -56.7 NC_005264.1 + 38797 0.66 0.870376
Target:  5'- -cGGUGACguacuccgcgGCGACC-CCGGCGCGgAc -3'
miRNA:   3'- uuUCGCUG----------UGCUGGuGGCUGCGCgUc -5'
24364 3' -56.7 NC_005264.1 + 108047 0.66 0.877596
Target:  5'- -cGGCGACuaugACGGCCugCccgguguucugGAUGCGCAa -3'
miRNA:   3'- uuUCGCUG----UGCUGGugG-----------CUGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 45323 0.66 0.89138
Target:  5'- uAGGgGA-GCGACCGCaGACGCGCc- -3'
miRNA:   3'- uUUCgCUgUGCUGGUGgCUGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 106305 0.66 0.897937
Target:  5'- gAGAGCGACAg---CugCGGCGgGCAGg -3'
miRNA:   3'- -UUUCGCUGUgcugGugGCUGCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 162442 0.66 0.883908
Target:  5'- --cGCGAacagguaCACGACCgcGCCGGCGCuGCc- -3'
miRNA:   3'- uuuCGCU-------GUGCUGG--UGGCUGCG-CGuc -5'
24364 3' -56.7 NC_005264.1 + 135840 0.66 0.897937
Target:  5'- gAAAGCGAgaAUGGCUACCcGCGUGCc- -3'
miRNA:   3'- -UUUCGCUg-UGCUGGUGGcUGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 123203 0.66 0.890712
Target:  5'- cGAGGCcGCGCGGCaaaaccacagCGCCGugucuaggagcaaGCGCGCAGc -3'
miRNA:   3'- -UUUCGcUGUGCUG----------GUGGC-------------UGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 61417 0.66 0.884599
Target:  5'- uAAAGCGACA-----ACCGGCGCGCuGg -3'
miRNA:   3'- -UUUCGCUGUgcuggUGGCUGCGCGuC- -5'
24364 3' -56.7 NC_005264.1 + 43681 0.66 0.89138
Target:  5'- -cGGCGuuaAgGCGGCCGCCGGgGaGCGGg -3'
miRNA:   3'- uuUCGC---UgUGCUGGUGGCUgCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 105656 0.66 0.89138
Target:  5'- cGGGCGGCGCu-UUGCCGGCG-GCAGa -3'
miRNA:   3'- uUUCGCUGUGcuGGUGGCUGCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 75393 0.66 0.897937
Target:  5'- -uGGUG-CGCG-CCACCGucUGCGCGGc -3'
miRNA:   3'- uuUCGCuGUGCuGGUGGCu-GCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 138636 0.66 0.897937
Target:  5'- --cGCuGGCuuCGGCCACCGGCaccGCGcCAGa -3'
miRNA:   3'- uuuCG-CUGu-GCUGGUGGCUG---CGC-GUC- -5'
24364 3' -56.7 NC_005264.1 + 73055 0.67 0.862946
Target:  5'- -cGGCGGuaUGCGGCCAgagaCGugGCGUAGu -3'
miRNA:   3'- uuUCGCU--GUGCUGGUg---GCugCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 5994 0.66 0.870376
Target:  5'- cAAGGgGAguCGuCGGCC-CCGACGgGCGGg -3'
miRNA:   3'- -UUUCgCU--GU-GCUGGuGGCUGCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 74621 0.66 0.870376
Target:  5'- aGAAGCGAUcuugGCGcGCUACCGucaGCGCGa -3'
miRNA:   3'- -UUUCGCUG----UGC-UGGUGGCug-CGCGUc -5'
24364 3' -56.7 NC_005264.1 + 87607 0.66 0.877596
Target:  5'- --cGCGuuauACAaGACgGCCGcCGCGCAGg -3'
miRNA:   3'- uuuCGC----UGUgCUGgUGGCuGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.