Results 21 - 35 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 100422 | 0.69 | 0.922235 |
Target: 5'- cGGAUCaaGUGGGUgAUCGUAgaagcggagGGCGCa -3' miRNA: 3'- aCUUGG--CGCCCAgUAGCAUaa-------CCGUG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 101355 | 0.68 | 0.947321 |
Target: 5'- -aGACCGCGGGgcgCGUCGgc---GCGCu -3' miRNA: 3'- acUUGGCGCCCa--GUAGCauaacCGUG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 102992 | 0.66 | 0.981883 |
Target: 5'- cGAACCGCGagugcguGGUCAugagcUCGc-UUGGUGCg -3' miRNA: 3'- aCUUGGCGC-------CCAGU-----AGCauAACCGUG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 113090 | 0.66 | 0.975126 |
Target: 5'- -uAGCCGCGGGguugUGUGUcaUGGUGCu -3' miRNA: 3'- acUUGGCGCCCaguaGCAUA--ACCGUG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 115738 | 0.71 | 0.837452 |
Target: 5'- cGGccauCCGCGGGUUGUCGU--UGGC-Ca -3' miRNA: 3'- aCUu---GGCGCCCAGUAGCAuaACCGuG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 122638 | 0.66 | 0.977636 |
Target: 5'- --cGCCGCGGGgggCcgCGagggcgGGCGCg -3' miRNA: 3'- acuUGGCGCCCa--GuaGCauaa--CCGUG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 123302 | 0.67 | 0.966372 |
Target: 5'- gGAACCGCGGGg---CGgc--GGCAg -3' miRNA: 3'- aCUUGGCGCCCaguaGCauaaCCGUg -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 134609 | 1.11 | 0.004415 |
Target: 5'- aUGAACCGCGGGUCAUCGUAUUGGCACa -3' miRNA: 3'- -ACUUGGCGCCCAGUAGCAUAACCGUG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 145922 | 0.66 | 0.982088 |
Target: 5'- -cGGCgGCGGGUCAgCGcg--GGCAUg -3' miRNA: 3'- acUUGgCGCCCAGUaGCauaaCCGUG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 149864 | 0.66 | 0.982088 |
Target: 5'- cGGGCuCGCGucGUCGUCGgcggcGGCGCg -3' miRNA: 3'- aCUUG-GCGCc-CAGUAGCauaa-CCGUG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 151351 | 0.67 | 0.969501 |
Target: 5'- aGGGCCGCGcGGcCuUCGUuaugGGCAg -3' miRNA: 3'- aCUUGGCGC-CCaGuAGCAuaa-CCGUg -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 156297 | 0.68 | 0.927749 |
Target: 5'- gUGAACuCGCaGGGUCuccCGUAcgcGGCGCu -3' miRNA: 3'- -ACUUG-GCG-CCCAGua-GCAUaa-CCGUG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 162308 | 0.69 | 0.910464 |
Target: 5'- gGAacGCCGCGGGUCugaucgGUCGgccugGGcCACg -3' miRNA: 3'- aCU--UGGCGCCCAG------UAGCauaa-CC-GUG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 162665 | 0.68 | 0.947321 |
Target: 5'- cGcGCCgGCGGGUCGUagGUGUacggucGGCGCg -3' miRNA: 3'- aCuUGG-CGCCCAGUAg-CAUAa-----CCGUG- -5' |
|||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 162821 | 0.7 | 0.876785 |
Target: 5'- aGGGCCGCGGcGUUAUggCGUGccGGUGCg -3' miRNA: 3'- aCUUGGCGCC-CAGUA--GCAUaaCCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home