Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24365 | 5' | -52.8 | NC_005264.1 | + | 3611 | 0.66 | 0.977636 |
Target: 5'- --cGCCGCGGGgggCcgCGagggcgGGCGCg -3' miRNA: 3'- acuUGGCGCCCa--GuaGCauaa--CCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 4275 | 0.67 | 0.966372 |
Target: 5'- gGAACCGCGGGg---CGgc--GGCAg -3' miRNA: 3'- aCUUGGCGCCCaguaGCauaaCCGUg -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 18965 | 0.67 | 0.966372 |
Target: 5'- aUGGGCCGCGGaaacgAUCGcccgGGCACa -3' miRNA: 3'- -ACUUGGCGCCcag--UAGCauaaCCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 25196 | 0.69 | 0.910464 |
Target: 5'- aGGGCCGCGua----CGUGUUGGCGCa -3' miRNA: 3'- aCUUGGCGCccaguaGCAUAACCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 30838 | 0.66 | 0.982088 |
Target: 5'- cGGGCuCGCGucGUCGUCGgcggcGGCGCg -3' miRNA: 3'- aCUUG-GCGCc-CAGUAGCauaa-CCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 36372 | 0.69 | 0.91996 |
Target: 5'- aUGGACCGCGGGgagUAUCuccgcgcuaGGCGCc -3' miRNA: 3'- -ACUUGGCGCCCa--GUAGcauaa----CCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 43281 | 0.69 | 0.910464 |
Target: 5'- gGAacGCCGCGGGUCugaucgGUCGgccugGGcCACg -3' miRNA: 3'- aCU--UGGCGCCCAG------UAGCauaa-CC-GUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 44935 | 0.67 | 0.963023 |
Target: 5'- cGAACCGCGGGcC--CGU--UGcGCGCg -3' miRNA: 3'- aCUUGGCGCCCaGuaGCAuaAC-CGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 51939 | 0.66 | 0.974601 |
Target: 5'- cGAGCUugGCGaGGgugccgcuaacgCGUCGUGUcGGCGCg -3' miRNA: 3'- aCUUGG--CGC-CCa-----------GUAGCAUAaCCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 52203 | 0.72 | 0.783957 |
Target: 5'- aGGGCCGUGGGgcg-CGg--UGGCGCg -3' miRNA: 3'- aCUUGGCGCCCaguaGCauaACCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 61808 | 0.76 | 0.549607 |
Target: 5'- cGGGCCGCGGG-CAUCGccg-GGCAg -3' miRNA: 3'- aCUUGGCGCCCaGUAGCauaaCCGUg -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 62232 | 0.69 | 0.910464 |
Target: 5'- -cGGCCGCuucgGGGUCGUCGguauccUUGGCGa -3' miRNA: 3'- acUUGGCG----CCCAGUAGCau----AACCGUg -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 64264 | 0.66 | 0.972417 |
Target: 5'- gGGGCUGCGGGcgccguUCAUCuugc-GGCGCa -3' miRNA: 3'- aCUUGGCGCCC------AGUAGcauaaCCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 69053 | 0.68 | 0.933013 |
Target: 5'- -uGGCCGCGgccgccgggcaGGUCAUCGUcgUcGCGCa -3' miRNA: 3'- acUUGGCGC-----------CCAGUAGCAuaAcCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 69726 | 0.7 | 0.883993 |
Target: 5'- gUGAACCGCGGGag--CGcg--GGCACc -3' miRNA: 3'- -ACUUGGCGCCCaguaGCauaaCCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 83409 | 0.66 | 0.971851 |
Target: 5'- cGcGCCGCGGGUCGuugagaaUCGUcaucccaugggcgAUuagcaUGGCGCc -3' miRNA: 3'- aCuUGGCGCCCAGU-------AGCA-------------UA-----ACCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 88235 | 0.72 | 0.764892 |
Target: 5'- gGAACguggggucaggCGCgGGGUCAUCGUAgaucguaGGCACg -3' miRNA: 3'- aCUUG-----------GCG-CCCAGUAGCAUaa-----CCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 93863 | 0.68 | 0.942798 |
Target: 5'- --uGCgGCGGGUaGUCGUGccgUGGCAg -3' miRNA: 3'- acuUGgCGCCCAgUAGCAUa--ACCGUg -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 96307 | 0.68 | 0.942798 |
Target: 5'- cGAcgcCCGCaacgcGGUCGUCGUcagGGCACg -3' miRNA: 3'- aCUu--GGCGc----CCAGUAGCAuaaCCGUG- -5' |
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24365 | 5' | -52.8 | NC_005264.1 | + | 98408 | 0.66 | 0.972417 |
Target: 5'- aGAGCCGCGGcagacGUCAUCGccGUgcccgcGGCGu -3' miRNA: 3'- aCUUGGCGCC-----CAGUAGCa-UAa-----CCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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