miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24365 5' -52.8 NC_005264.1 + 134609 1.11 0.004415
Target:  5'- aUGAACCGCGGGUCAUCGUAUUGGCACa -3'
miRNA:   3'- -ACUUGGCGCCCAGUAGCAUAACCGUG- -5'
24365 5' -52.8 NC_005264.1 + 61808 0.76 0.549607
Target:  5'- cGGGCCGCGGG-CAUCGccg-GGCAg -3'
miRNA:   3'- aCUUGGCGCCCaGUAGCauaaCCGUg -5'
24365 5' -52.8 NC_005264.1 + 88235 0.72 0.764892
Target:  5'- gGAACguggggucaggCGCgGGGUCAUCGUAgaucguaGGCACg -3'
miRNA:   3'- aCUUG-----------GCG-CCCAGUAGCAUaa-----CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 52203 0.72 0.783957
Target:  5'- aGGGCCGUGGGgcg-CGg--UGGCGCg -3'
miRNA:   3'- aCUUGGCGCCCaguaGCauaACCGUG- -5'
24365 5' -52.8 NC_005264.1 + 115738 0.71 0.837452
Target:  5'- cGGccauCCGCGGGUUGUCGU--UGGC-Ca -3'
miRNA:   3'- aCUu---GGCGCCCAGUAGCAuaACCGuG- -5'
24365 5' -52.8 NC_005264.1 + 162821 0.7 0.876785
Target:  5'- aGGGCCGCGGcGUUAUggCGUGccGGUGCg -3'
miRNA:   3'- aCUUGGCGCC-CAGUA--GCAUaaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 69726 0.7 0.883993
Target:  5'- gUGAACCGCGGGag--CGcg--GGCACc -3'
miRNA:   3'- -ACUUGGCGCCCaguaGCauaaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 43281 0.69 0.910464
Target:  5'- gGAacGCCGCGGGUCugaucgGUCGgccugGGcCACg -3'
miRNA:   3'- aCU--UGGCGCCCAG------UAGCauaa-CC-GUG- -5'
24365 5' -52.8 NC_005264.1 + 25196 0.69 0.910464
Target:  5'- aGGGCCGCGua----CGUGUUGGCGCa -3'
miRNA:   3'- aCUUGGCGCccaguaGCAUAACCGUG- -5'
24365 5' -52.8 NC_005264.1 + 162308 0.69 0.910464
Target:  5'- gGAacGCCGCGGGUCugaucgGUCGgccugGGcCACg -3'
miRNA:   3'- aCU--UGGCGCCCAG------UAGCauaa-CC-GUG- -5'
24365 5' -52.8 NC_005264.1 + 62232 0.69 0.910464
Target:  5'- -cGGCCGCuucgGGGUCGUCGguauccUUGGCGa -3'
miRNA:   3'- acUUGGCG----CCCAGUAGCau----AACCGUg -5'
24365 5' -52.8 NC_005264.1 + 36372 0.69 0.91996
Target:  5'- aUGGACCGCGGGgagUAUCuccgcgcuaGGCGCc -3'
miRNA:   3'- -ACUUGGCGCCCa--GUAGcauaa----CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 100422 0.69 0.922235
Target:  5'- cGGAUCaaGUGGGUgAUCGUAgaagcggagGGCGCa -3'
miRNA:   3'- aCUUGG--CGCCCAgUAGCAUaa-------CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 156297 0.68 0.927749
Target:  5'- gUGAACuCGCaGGGUCuccCGUAcgcGGCGCu -3'
miRNA:   3'- -ACUUG-GCG-CCCAGua-GCAUaa-CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 69053 0.68 0.933013
Target:  5'- -uGGCCGCGgccgccgggcaGGUCAUCGUcgUcGCGCa -3'
miRNA:   3'- acUUGGCGC-----------CCAGUAGCAuaAcCGUG- -5'
24365 5' -52.8 NC_005264.1 + 93863 0.68 0.942798
Target:  5'- --uGCgGCGGGUaGUCGUGccgUGGCAg -3'
miRNA:   3'- acuUGgCGCCCAgUAGCAUa--ACCGUg -5'
24365 5' -52.8 NC_005264.1 + 96307 0.68 0.942798
Target:  5'- cGAcgcCCGCaacgcGGUCGUCGUcagGGCACg -3'
miRNA:   3'- aCUu--GGCGc----CCAGUAGCAuaaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 162665 0.68 0.947321
Target:  5'- cGcGCCgGCGGGUCGUagGUGUacggucGGCGCg -3'
miRNA:   3'- aCuUGG-CGCCCAGUAg-CAUAa-----CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 101355 0.68 0.947321
Target:  5'- -aGACCGCGGGgcgCGUCGgc---GCGCu -3'
miRNA:   3'- acUUGGCGCCCa--GUAGCauaacCGUG- -5'
24365 5' -52.8 NC_005264.1 + 44935 0.67 0.963023
Target:  5'- cGAACCGCGGGcC--CGU--UGcGCGCg -3'
miRNA:   3'- aCUUGGCGCCCaGuaGCAuaAC-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.