miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24365 5' -52.8 NC_005264.1 + 61808 0.76 0.549607
Target:  5'- cGGGCCGCGGG-CAUCGccg-GGCAg -3'
miRNA:   3'- aCUUGGCGCCCaGUAGCauaaCCGUg -5'
24365 5' -52.8 NC_005264.1 + 149864 0.66 0.982088
Target:  5'- cGGGCuCGCGucGUCGUCGgcggcGGCGCg -3'
miRNA:   3'- aCUUG-GCGCc-CAGUAGCauaa-CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 145922 0.66 0.982088
Target:  5'- -cGGCgGCGGGUCAgCGcg--GGCAUg -3'
miRNA:   3'- acUUGgCGCCCAGUaGCauaaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 102992 0.66 0.981883
Target:  5'- cGAACCGCGagugcguGGUCAugagcUCGc-UUGGUGCg -3'
miRNA:   3'- aCUUGGCGC-------CCAGU-----AGCauAACCGUG- -5'
24365 5' -52.8 NC_005264.1 + 122638 0.66 0.977636
Target:  5'- --cGCCGCGGGgggCcgCGagggcgGGCGCg -3'
miRNA:   3'- acuUGGCGCCCa--GuaGCauaa--CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 51939 0.66 0.974601
Target:  5'- cGAGCUugGCGaGGgugccgcuaacgCGUCGUGUcGGCGCg -3'
miRNA:   3'- aCUUGG--CGC-CCa-----------GUAGCAUAaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 18965 0.67 0.966372
Target:  5'- aUGGGCCGCGGaaacgAUCGcccgGGCACa -3'
miRNA:   3'- -ACUUGGCGCCcag--UAGCauaaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 123302 0.67 0.966372
Target:  5'- gGAACCGCGGGg---CGgc--GGCAg -3'
miRNA:   3'- aCUUGGCGCCCaguaGCauaaCCGUg -5'
24365 5' -52.8 NC_005264.1 + 162665 0.68 0.947321
Target:  5'- cGcGCCgGCGGGUCGUagGUGUacggucGGCGCg -3'
miRNA:   3'- aCuUGG-CGCCCAGUAg-CAUAa-----CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 52203 0.72 0.783957
Target:  5'- aGGGCCGUGGGgcg-CGg--UGGCGCg -3'
miRNA:   3'- aCUUGGCGCCCaguaGCauaACCGUG- -5'
24365 5' -52.8 NC_005264.1 + 115738 0.71 0.837452
Target:  5'- cGGccauCCGCGGGUUGUCGU--UGGC-Ca -3'
miRNA:   3'- aCUu---GGCGCCCAGUAGCAuaACCGuG- -5'
24365 5' -52.8 NC_005264.1 + 69726 0.7 0.883993
Target:  5'- gUGAACCGCGGGag--CGcg--GGCACc -3'
miRNA:   3'- -ACUUGGCGCCCaguaGCauaaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 162308 0.69 0.910464
Target:  5'- gGAacGCCGCGGGUCugaucgGUCGgccugGGcCACg -3'
miRNA:   3'- aCU--UGGCGCCCAG------UAGCauaa-CC-GUG- -5'
24365 5' -52.8 NC_005264.1 + 62232 0.69 0.910464
Target:  5'- -cGGCCGCuucgGGGUCGUCGguauccUUGGCGa -3'
miRNA:   3'- acUUGGCG----CCCAGUAGCau----AACCGUg -5'
24365 5' -52.8 NC_005264.1 + 36372 0.69 0.91996
Target:  5'- aUGGACCGCGGGgagUAUCuccgcgcuaGGCGCc -3'
miRNA:   3'- -ACUUGGCGCCCa--GUAGcauaa----CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 134609 1.11 0.004415
Target:  5'- aUGAACCGCGGGUCAUCGUAUUGGCACa -3'
miRNA:   3'- -ACUUGGCGCCCAGUAGCAUAACCGUG- -5'
24365 5' -52.8 NC_005264.1 + 3611 0.66 0.977636
Target:  5'- --cGCCGCGGGgggCcgCGagggcgGGCGCg -3'
miRNA:   3'- acuUGGCGCCCa--GuaGCauaa--CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 113090 0.66 0.975126
Target:  5'- -uAGCCGCGGGguugUGUGUcaUGGUGCu -3'
miRNA:   3'- acUUGGCGCCCaguaGCAUA--ACCGUG- -5'
24365 5' -52.8 NC_005264.1 + 64264 0.66 0.972417
Target:  5'- gGGGCUGCGGGcgccguUCAUCuugc-GGCGCa -3'
miRNA:   3'- aCUUGGCGCCC------AGUAGcauaaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 98408 0.66 0.972417
Target:  5'- aGAGCCGCGGcagacGUCAUCGccGUgcccgcGGCGu -3'
miRNA:   3'- aCUUGGCGCC-----CAGUAGCa-UAa-----CCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.