miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24366 5' -55.3 NC_005264.1 + 63161 0.72 0.6621
Target:  5'- gCGAgGGCAUgaaCCCUGCCGCGu---GGGc -3'
miRNA:   3'- -GCUgUCGUA---GGGAUGGCGCucuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 65568 0.67 0.904275
Target:  5'- aGGCAGCggCCaCUACCGUGccAAGGc -3'
miRNA:   3'- gCUGUCGuaGG-GAUGGCGCucUUCCc -5'
24366 5' -55.3 NC_005264.1 + 73079 0.66 0.946318
Target:  5'- cCGcGCGGCAUCUCUACUuCGAcGGGuGGGa -3'
miRNA:   3'- -GC-UGUCGUAGGGAUGGcGCU-CUU-CCC- -5'
24366 5' -55.3 NC_005264.1 + 92130 0.66 0.932303
Target:  5'- -cGCAGCGUUCggcgACCGaguGGGAGGGGa -3'
miRNA:   3'- gcUGUCGUAGGga--UGGCg--CUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 93057 0.74 0.591285
Target:  5'- aGAgGGC-UgUCUGCUGCGGGAGGGGc -3'
miRNA:   3'- gCUgUCGuAgGGAUGGCGCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 100839 0.7 0.800752
Target:  5'- aCGACGGCGaguucUCCCUcgACgcaugggaccaggcgCGCGAcGAGGGGg -3'
miRNA:   3'- -GCUGUCGU-----AGGGA--UG---------------GCGCU-CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 110151 0.66 0.954512
Target:  5'- gGGCGGCGaaaCCC-GCCGCGGcuuuGGGGc -3'
miRNA:   3'- gCUGUCGUa--GGGaUGGCGCUcu--UCCC- -5'
24366 5' -55.3 NC_005264.1 + 115638 0.69 0.830766
Target:  5'- uCGACGGCcguggccccgcucAUCCCaggcuugACCGuCGAGGAGGc -3'
miRNA:   3'- -GCUGUCG-------------UAGGGa------UGGC-GCUCUUCCc -5'
24366 5' -55.3 NC_005264.1 + 116433 0.67 0.904275
Target:  5'- uGGgGGCGUCUg-GCCGCGGGGgcgacgaucGGGGc -3'
miRNA:   3'- gCUgUCGUAGGgaUGGCGCUCU---------UCCC- -5'
24366 5' -55.3 NC_005264.1 + 120342 0.7 0.797199
Target:  5'- uGuACGGCgAUCCCUAaacCCaGCGAGcGGGGa -3'
miRNA:   3'- gC-UGUCG-UAGGGAU---GG-CGCUCuUCCC- -5'
24366 5' -55.3 NC_005264.1 + 121782 0.66 0.946318
Target:  5'- aCGGC-GCGUCCCccggcgccgUACCGUcuGGGGAGuGGu -3'
miRNA:   3'- -GCUGuCGUAGGG---------AUGGCG--CUCUUC-CC- -5'
24366 5' -55.3 NC_005264.1 + 121793 0.66 0.950528
Target:  5'- gGACGGCG-CCCaauaCGUuAGGAGGGg -3'
miRNA:   3'- gCUGUCGUaGGGaug-GCGcUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 122193 0.68 0.882628
Target:  5'- -aACGGCGaCCCU-CCGCGucgcgacggcgcggGGAAGGGc -3'
miRNA:   3'- gcUGUCGUaGGGAuGGCGC--------------UCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 122702 0.67 0.910346
Target:  5'- gGGCGGcCGUCUCgGCgGCGAGAcgAGGa -3'
miRNA:   3'- gCUGUC-GUAGGGaUGgCGCUCU--UCCc -5'
24366 5' -55.3 NC_005264.1 + 124102 0.67 0.904275
Target:  5'- aGGCGGCcagCCCguCCG-GGGAGGGGu -3'
miRNA:   3'- gCUGUCGua-GGGauGGCgCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 124378 0.72 0.692251
Target:  5'- gCGGCAGCA-UgCUACCGUGcGGAAGGa -3'
miRNA:   3'- -GCUGUCGUaGgGAUGGCGC-UCUUCCc -5'
24366 5' -55.3 NC_005264.1 + 124850 0.68 0.884009
Target:  5'- cCGGCGGCGguggccgccacUCgCCUgGCCGCGGuuaucgcccuaucGAGGGGg -3'
miRNA:   3'- -GCUGUCGU-----------AG-GGA-UGGCGCU-------------CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 126953 0.68 0.870542
Target:  5'- gGAC-GUAaCgCUGCCGCGAGAcgagccggAGGGg -3'
miRNA:   3'- gCUGuCGUaGgGAUGGCGCUCU--------UCCC- -5'
24366 5' -55.3 NC_005264.1 + 127827 0.66 0.950528
Target:  5'- cCGACAGCGUUgCCU-CCGCGGcGGccGGc -3'
miRNA:   3'- -GCUGUCGUAG-GGAuGGCGCU-CUucCC- -5'
24366 5' -55.3 NC_005264.1 + 130957 0.68 0.881934
Target:  5'- aCGuCAGCAUCgacaaggcgugcgCCgACCGCGAGGcgcuggaagauuucAGGGg -3'
miRNA:   3'- -GCuGUCGUAG-------------GGaUGGCGCUCU--------------UCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.