miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24366 5' -55.3 NC_005264.1 + 1315 0.7 0.797199
Target:  5'- uGuACGGCgAUCCCUAaacCCaGCGAGcGGGGa -3'
miRNA:   3'- gC-UGUCG-UAGGGAU---GG-CGCUCuUCCC- -5'
24366 5' -55.3 NC_005264.1 + 2756 0.66 0.946318
Target:  5'- aCGGC-GCGUCCCccggcgccgUACCGUcuGGGGAGuGGu -3'
miRNA:   3'- -GCUGuCGUAGGG---------AUGGCG--CUCUUC-CC- -5'
24366 5' -55.3 NC_005264.1 + 3166 0.68 0.882628
Target:  5'- -aACGGCGaCCCU-CCGCGucgcgacggcgcggGGAAGGGc -3'
miRNA:   3'- gcUGUCGUaGGGAuGGCGC--------------UCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 3675 0.67 0.910346
Target:  5'- gGGCGGcCGUCUCgGCgGCGAGAcgAGGa -3'
miRNA:   3'- gCUGUC-GUAGGGaUGgCGCUCU--UCCc -5'
24366 5' -55.3 NC_005264.1 + 5075 0.67 0.904275
Target:  5'- aGGCGGCcagCCCguCCG-GGGAGGGGu -3'
miRNA:   3'- gCUGUCGua-GGGauGGCgCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 5824 0.68 0.884009
Target:  5'- cCGGCGGCGguggccgccacUCgCCUgGCCGCGGuuaucgcccuaucGAGGGGg -3'
miRNA:   3'- -GCUGUCGU-----------AG-GGA-UGGCGCU-------------CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 7927 0.68 0.870542
Target:  5'- gGAC-GUAaCgCUGCCGCGAGAcgagccggAGGGg -3'
miRNA:   3'- gCUGuCGUaGgGAUGGCGCUCU--------UCCC- -5'
24366 5' -55.3 NC_005264.1 + 12550 0.68 0.891447
Target:  5'- gGGgGGCGUUCgccgcgaagaUACCGCuGAGggGGGa -3'
miRNA:   3'- gCUgUCGUAGGg---------AUGGCG-CUCuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 16641 0.69 0.831593
Target:  5'- uCGAguGCGUCUCUGgUGCgGAGcgcGAGGGa -3'
miRNA:   3'- -GCUguCGUAGGGAUgGCG-CUC---UUCCC- -5'
24366 5' -55.3 NC_005264.1 + 21219 0.67 0.927165
Target:  5'- aCGGCGGUGcCCCgACCGCGAuuuggacgucauGAGGGc -3'
miRNA:   3'- -GCUGUCGUaGGGaUGGCGCU------------CUUCCc -5'
24366 5' -55.3 NC_005264.1 + 25196 0.66 0.946318
Target:  5'- uGAgGGCcgCCCUGuguCUGuCGAGcGGGGa -3'
miRNA:   3'- gCUgUCGuaGGGAU---GGC-GCUCuUCCC- -5'
24366 5' -55.3 NC_005264.1 + 31512 0.69 0.85555
Target:  5'- aGGCGGC-UCCagGCUcggGCGGGGAGGGc -3'
miRNA:   3'- gCUGUCGuAGGgaUGG---CGCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 35547 0.67 0.904275
Target:  5'- uGuuGGCGUUCCUgaaccaacacGCCaGCGAaGAGGGGg -3'
miRNA:   3'- gCugUCGUAGGGA----------UGG-CGCU-CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 37560 0.68 0.877727
Target:  5'- gCGACAGCGcgCC--GCCGCG-GAGGGc -3'
miRNA:   3'- -GCUGUCGUa-GGgaUGGCGCuCUUCCc -5'
24366 5' -55.3 NC_005264.1 + 37580 0.74 0.551296
Target:  5'- aGGCGGCAagUCUCgcggcgGCCGCGGcGggGGGu -3'
miRNA:   3'- gCUGUCGU--AGGGa-----UGGCGCU-CuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 39671 0.66 0.932303
Target:  5'- gCGGCaAGCAUCgCgacaagcgGCCGUGuuuggcAGAGGGGa -3'
miRNA:   3'- -GCUG-UCGUAGgGa-------UGGCGC------UCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 40151 0.66 0.932303
Target:  5'- aGACGGCcgCCC-AUCGuCGAGAcGGcGg -3'
miRNA:   3'- gCUGUCGuaGGGaUGGC-GCUCUuCC-C- -5'
24366 5' -55.3 NC_005264.1 + 42795 0.73 0.638828
Target:  5'- cCGGCGgaauagguaaaaccGguUCCCgccgguCCGCGAGggGGGa -3'
miRNA:   3'- -GCUGU--------------CguAGGGau----GGCGCUCuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 43479 0.68 0.884696
Target:  5'- uGGCGGUugucgCCaUUGCCGCGAuuuGggGGGu -3'
miRNA:   3'- gCUGUCGua---GG-GAUGGCGCU---CuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 50772 0.7 0.769841
Target:  5'- gGGCAacGCAUccaaggcgaCCCguuCCGCGAGAAGGa -3'
miRNA:   3'- gCUGU--CGUA---------GGGau-GGCGCUCUUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.