miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24366 5' -55.3 NC_005264.1 + 133077 1.1 0.003331
Target:  5'- cCGACAGCAUCCCUACCGCGAGAAGGGu -3'
miRNA:   3'- -GCUGUCGUAGGGAUGGCGCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 156607 0.74 0.551296
Target:  5'- aGGCGGCAagUCUCgcggcgGCCGCGGcGggGGGu -3'
miRNA:   3'- gCUGUCGU--AGGGa-----UGGCGCU-CuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 37580 0.74 0.551296
Target:  5'- aGGCGGCAagUCUCgcggcgGCCGCGGcGggGGGu -3'
miRNA:   3'- gCUGUCGU--AGGGa-----UGGCGCU-CuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 151195 0.74 0.561227
Target:  5'- aCGACAGCAgCCCUGCCGCGcuGAu--- -3'
miRNA:   3'- -GCUGUCGUaGGGAUGGCGCu-CUuccc -5'
24366 5' -55.3 NC_005264.1 + 93057 0.74 0.591285
Target:  5'- aGAgGGC-UgUCUGCUGCGGGAGGGGc -3'
miRNA:   3'- gCUgUCGuAgGGAUGGCGCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 42795 0.73 0.638828
Target:  5'- cCGGCGgaauagguaaaaccGguUCCCgccgguCCGCGAGggGGGa -3'
miRNA:   3'- -GCUGU--------------CguAGGGau----GGCGCUCuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 161821 0.73 0.638828
Target:  5'- cCGGCGgaauagguaaaaccGguUCCCgccgguCCGCGAGggGGGa -3'
miRNA:   3'- -GCUGU--------------CguAGGGau----GGCGCUCuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 63161 0.72 0.6621
Target:  5'- gCGAgGGCAUgaaCCCUGCCGCGu---GGGc -3'
miRNA:   3'- -GCUgUCGUA---GGGAUGGCGCucuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 124378 0.72 0.692251
Target:  5'- gCGGCAGCA-UgCUACCGUGcGGAAGGa -3'
miRNA:   3'- -GCUGUCGUaGgGAUGGCGC-UCUUCCc -5'
24366 5' -55.3 NC_005264.1 + 148177 0.71 0.750987
Target:  5'- cCGGCAGCAuggUCUCUGCCGUugccgcGAGGGa -3'
miRNA:   3'- -GCUGUCGU---AGGGAUGGCGcuc---UUCCC- -5'
24366 5' -55.3 NC_005264.1 + 50772 0.7 0.769841
Target:  5'- gGGCAacGCAUccaaggcgaCCCguuCCGCGAGAAGGa -3'
miRNA:   3'- gCUGU--CGUA---------GGGau-GGCGCUCUUCCc -5'
24366 5' -55.3 NC_005264.1 + 1315 0.7 0.797199
Target:  5'- uGuACGGCgAUCCCUAaacCCaGCGAGcGGGGa -3'
miRNA:   3'- gC-UGUCG-UAGGGAU---GG-CGCUCuUCCC- -5'
24366 5' -55.3 NC_005264.1 + 120342 0.7 0.797199
Target:  5'- uGuACGGCgAUCCCUAaacCCaGCGAGcGGGGa -3'
miRNA:   3'- gC-UGUCG-UAGGGAU---GG-CGCUCuUCCC- -5'
24366 5' -55.3 NC_005264.1 + 100839 0.7 0.800752
Target:  5'- aCGACGGCGaguucUCCCUcgACgcaugggaccaggcgCGCGAcGAGGGGg -3'
miRNA:   3'- -GCUGUCGU-----AGGGA--UG---------------GCGCU-CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 115638 0.69 0.830766
Target:  5'- uCGACGGCcguggccccgcucAUCCCaggcuugACCGuCGAGGAGGc -3'
miRNA:   3'- -GCUGUCG-------------UAGGGa------UGGC-GCUCUUCCc -5'
24366 5' -55.3 NC_005264.1 + 16641 0.69 0.831593
Target:  5'- uCGAguGCGUCUCUGgUGCgGAGcgcGAGGGa -3'
miRNA:   3'- -GCUguCGUAGGGAUgGCG-CUC---UUCCC- -5'
24366 5' -55.3 NC_005264.1 + 145083 0.69 0.831593
Target:  5'- gGGCAGCucUCCUUGCCGCGAacuuGGc -3'
miRNA:   3'- gCUGUCGu-AGGGAUGGCGCUcuu-CCc -5'
24366 5' -55.3 NC_005264.1 + 153096 0.69 0.846964
Target:  5'- aCGGCGGCuUgCCUGCCGcCGAGucagaaaGAGGa -3'
miRNA:   3'- -GCUGUCGuAgGGAUGGC-GCUC-------UUCCc -5'
24366 5' -55.3 NC_005264.1 + 150539 0.69 0.85555
Target:  5'- aGGCGGC-UCCagGCUcggGCGGGGAGGGc -3'
miRNA:   3'- gCUGUCGuAGGgaUGG---CGCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 31512 0.69 0.85555
Target:  5'- aGGCGGC-UCCagGCUcggGCGGGGAGGGc -3'
miRNA:   3'- gCUGUCGuAGGgaUGG---CGCUCUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.