Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 21219 | 0.67 | 0.927165 |
Target: 5'- aCGGCGGUGcCCCgACCGCGAuuuggacgucauGAGGGc -3' miRNA: 3'- -GCUGUCGUaGGGaUGGCGCU------------CUUCCc -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 124850 | 0.68 | 0.884009 |
Target: 5'- cCGGCGGCGguggccgccacUCgCCUgGCCGCGGuuaucgcccuaucGAGGGGg -3' miRNA: 3'- -GCUGUCGU-----------AG-GGA-UGGCGCU-------------CUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 162506 | 0.68 | 0.884696 |
Target: 5'- uGGCGGUugucgCCaUUGCCGCGAuuuGggGGGu -3' miRNA: 3'- gCUGUCGua---GG-GAUGGCGCU---CuuCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 131577 | 0.68 | 0.891447 |
Target: 5'- gGGgGGCGUUCgccgcgaagaUACCGCuGAGggGGGa -3' miRNA: 3'- gCUgUCGUAGGg---------AUGGCG-CUCuuCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 65568 | 0.67 | 0.904275 |
Target: 5'- aGGCAGCggCCaCUACCGUGccAAGGc -3' miRNA: 3'- gCUGUCGuaGG-GAUGGCGCucUUCCc -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 116433 | 0.67 | 0.904275 |
Target: 5'- uGGgGGCGUCUg-GCCGCGGGGgcgacgaucGGGGc -3' miRNA: 3'- gCUgUCGUAGGgaUGGCGCUCU---------UCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 124102 | 0.67 | 0.904275 |
Target: 5'- aGGCGGCcagCCCguCCG-GGGAGGGGu -3' miRNA: 3'- gCUGUCGua-GGGauGGCgCUCUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 154574 | 0.67 | 0.904275 |
Target: 5'- uGuuGGCGUUCCUgaaccaacacGCCaGCGAaGAGGGGg -3' miRNA: 3'- gCugUCGUAGGGA----------UGG-CGCU-CUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 122702 | 0.67 | 0.910346 |
Target: 5'- gGGCGGcCGUCUCgGCgGCGAGAcgAGGa -3' miRNA: 3'- gCUGUC-GUAGGGaUGgCGCUCU--UCCc -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 122193 | 0.68 | 0.882628 |
Target: 5'- -aACGGCGaCCCU-CCGCGucgcgacggcgcggGGAAGGGc -3' miRNA: 3'- gcUGUCGUaGGGAuGGCGC--------------UCUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 136676 | 0.68 | 0.877727 |
Target: 5'- cCGACAGUgccgcgaaaGUCCUcGCCGCGGccuGGGa -3' miRNA: 3'- -GCUGUCG---------UAGGGaUGGCGCUcuuCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 37560 | 0.68 | 0.877727 |
Target: 5'- gCGACAGCGcgCC--GCCGCG-GAGGGc -3' miRNA: 3'- -GCUGUCGUa-GGgaUGGCGCuCUUCCc -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 93057 | 0.74 | 0.591285 |
Target: 5'- aGAgGGC-UgUCUGCUGCGGGAGGGGc -3' miRNA: 3'- gCUgUCGuAgGGAUGGCGCUCUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 161821 | 0.73 | 0.638828 |
Target: 5'- cCGGCGgaauagguaaaaccGguUCCCgccgguCCGCGAGggGGGa -3' miRNA: 3'- -GCUGU--------------CguAGGGau----GGCGCUCuuCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 63161 | 0.72 | 0.6621 |
Target: 5'- gCGAgGGCAUgaaCCCUGCCGCGu---GGGc -3' miRNA: 3'- -GCUgUCGUA---GGGAUGGCGCucuuCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 50772 | 0.7 | 0.769841 |
Target: 5'- gGGCAacGCAUccaaggcgaCCCguuCCGCGAGAAGGa -3' miRNA: 3'- gCUGU--CGUA---------GGGau-GGCGCUCUUCCc -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 120342 | 0.7 | 0.797199 |
Target: 5'- uGuACGGCgAUCCCUAaacCCaGCGAGcGGGGa -3' miRNA: 3'- gC-UGUCG-UAGGGAU---GG-CGCUCuUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 16641 | 0.69 | 0.831593 |
Target: 5'- uCGAguGCGUCUCUGgUGCgGAGcgcGAGGGa -3' miRNA: 3'- -GCUguCGUAGGGAUgGCG-CUC---UUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 150539 | 0.69 | 0.85555 |
Target: 5'- aGGCGGC-UCCagGCUcggGCGGGGAGGGc -3' miRNA: 3'- gCUGUCGuAGGgaUGG---CGCUCUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 126953 | 0.68 | 0.870542 |
Target: 5'- gGAC-GUAaCgCUGCCGCGAGAcgagccggAGGGg -3' miRNA: 3'- gCUGuCGUaGgGAUGGCGCUCU--------UCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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