Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 155447 | 0.66 | 0.954512 |
Target: 5'- aCGACGGCG-CCgggGCCGCGAucGAAGa- -3' miRNA: 3'- -GCUGUCGUaGGga-UGGCGCU--CUUCcc -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 3166 | 0.68 | 0.882628 |
Target: 5'- -aACGGCGaCCCU-CCGCGucgcgacggcgcggGGAAGGGc -3' miRNA: 3'- gcUGUCGUaGGGAuGGCGC--------------UCUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 7927 | 0.68 | 0.870542 |
Target: 5'- gGAC-GUAaCgCUGCCGCGAGAcgagccggAGGGg -3' miRNA: 3'- gCUGuCGUaGgGAUGGCGCUCU--------UCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 133077 | 1.1 | 0.003331 |
Target: 5'- cCGACAGCAUCCCUACCGCGAGAAGGGu -3' miRNA: 3'- -GCUGUCGUAGGGAUGGCGCUCUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 2756 | 0.66 | 0.946318 |
Target: 5'- aCGGC-GCGUCCCccggcgccgUACCGUcuGGGGAGuGGu -3' miRNA: 3'- -GCUGuCGUAGGG---------AUGGCG--CUCUUC-CC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 160509 | 0.66 | 0.941878 |
Target: 5'- cCGAaaaAGUAcauUCCUUacgcGCCGCuGGGggGGGa -3' miRNA: 3'- -GCUg--UCGU---AGGGA----UGGCG-CUCuuCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 40151 | 0.66 | 0.932303 |
Target: 5'- aGACGGCcgCCC-AUCGuCGAGAcGGcGg -3' miRNA: 3'- gCUGUCGuaGGGaUGGC-GCUCUuCC-C- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 39671 | 0.66 | 0.932303 |
Target: 5'- gCGGCaAGCAUCgCgacaagcgGCCGUGuuuggcAGAGGGGa -3' miRNA: 3'- -GCUG-UCGUAGgGa-------UGGCGC------UCUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 35547 | 0.67 | 0.904275 |
Target: 5'- uGuuGGCGUUCCUgaaccaacacGCCaGCGAaGAGGGGg -3' miRNA: 3'- gCugUCGUAGGGA----------UGG-CGCU-CUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 5824 | 0.68 | 0.884009 |
Target: 5'- cCGGCGGCGguggccgccacUCgCCUgGCCGCGGuuaucgcccuaucGAGGGGg -3' miRNA: 3'- -GCUGUCGU-----------AG-GGA-UGGCGCU-------------CUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 12550 | 0.68 | 0.891447 |
Target: 5'- gGGgGGCGUUCgccgcgaagaUACCGCuGAGggGGGa -3' miRNA: 3'- gCUgUCGUAGGg---------AUGGCG-CUCuuCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 3675 | 0.67 | 0.910346 |
Target: 5'- gGGCGGcCGUCUCgGCgGCGAGAcgAGGa -3' miRNA: 3'- gCUGUC-GUAGGGaUGgCGCUCU--UCCc -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 110151 | 0.66 | 0.954512 |
Target: 5'- gGGCGGCGaaaCCC-GCCGCGGcuuuGGGGc -3' miRNA: 3'- gCUGUCGUa--GGGaUGGCGCUcu--UCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 132864 | 0.68 | 0.891447 |
Target: 5'- aCGAgCAGCuuacgAUCCUUACCGCGAuccuAGGa -3' miRNA: 3'- -GCU-GUCG-----UAGGGAUGGCGCUcu--UCCc -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 127827 | 0.66 | 0.950528 |
Target: 5'- cCGACAGCGUUgCCU-CCGCGGcGGccGGc -3' miRNA: 3'- -GCUGUCGUAG-GGAuGGCGCU-CUucCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 135227 | 0.67 | 0.921792 |
Target: 5'- aGAUGGCGUCCUgugacgACCGUGaAGAuGGa -3' miRNA: 3'- gCUGUCGUAGGGa-----UGGCGC-UCUuCCc -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 43479 | 0.68 | 0.884696 |
Target: 5'- uGGCGGUugucgCCaUUGCCGCGAuuuGggGGGu -3' miRNA: 3'- gCUGUCGua---GG-GAUGGCGCU---CuuCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 130957 | 0.68 | 0.881934 |
Target: 5'- aCGuCAGCAUCgacaaggcgugcgCCgACCGCGAGGcgcuggaagauuucAGGGg -3' miRNA: 3'- -GCuGUCGUAG-------------GGaUGGCGCUCU--------------UCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 121793 | 0.66 | 0.950528 |
Target: 5'- gGACGGCG-CCCaauaCGUuAGGAGGGg -3' miRNA: 3'- gCUGUCGUaGGGaug-GCGcUCUUCCC- -5' |
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24366 | 5' | -55.3 | NC_005264.1 | + | 147148 | 0.66 | 0.936727 |
Target: 5'- uCGACGGCGUUCUg--UGCGAGGAgcauuuuGGGg -3' miRNA: 3'- -GCUGUCGUAGGGaugGCGCUCUU-------CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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