miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24366 5' -55.3 NC_005264.1 + 100839 0.7 0.800752
Target:  5'- aCGACGGCGaguucUCCCUcgACgcaugggaccaggcgCGCGAcGAGGGGg -3'
miRNA:   3'- -GCUGUCGU-----AGGGA--UG---------------GCGCU-CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 31512 0.69 0.85555
Target:  5'- aGGCGGC-UCCagGCUcggGCGGGGAGGGc -3'
miRNA:   3'- gCUGUCGuAGGgaUGG---CGCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 3166 0.68 0.882628
Target:  5'- -aACGGCGaCCCU-CCGCGucgcgacggcgcggGGAAGGGc -3'
miRNA:   3'- gcUGUCGUaGGGAuGGCGC--------------UCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 133077 1.1 0.003331
Target:  5'- cCGACAGCAUCCCUACCGCGAGAAGGGu -3'
miRNA:   3'- -GCUGUCGUAGGGAUGGCGCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 115638 0.69 0.830766
Target:  5'- uCGACGGCcguggccccgcucAUCCCaggcuugACCGuCGAGGAGGc -3'
miRNA:   3'- -GCUGUCG-------------UAGGGa------UGGC-GCUCUUCCc -5'
24366 5' -55.3 NC_005264.1 + 5824 0.68 0.884009
Target:  5'- cCGGCGGCGguggccgccacUCgCCUgGCCGCGGuuaucgcccuaucGAGGGGg -3'
miRNA:   3'- -GCUGUCGU-----------AG-GGA-UGGCGCU-------------CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 37580 0.74 0.551296
Target:  5'- aGGCGGCAagUCUCgcggcgGCCGCGGcGggGGGu -3'
miRNA:   3'- gCUGUCGU--AGGGa-----UGGCGCU-CuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 43479 0.68 0.884696
Target:  5'- uGGCGGUugucgCCaUUGCCGCGAuuuGggGGGu -3'
miRNA:   3'- gCUGUCGua---GG-GAUGGCGCU---CuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 124378 0.72 0.692251
Target:  5'- gCGGCAGCA-UgCUACCGUGcGGAAGGa -3'
miRNA:   3'- -GCUGUCGUaGgGAUGGCGC-UCUUCCc -5'
24366 5' -55.3 NC_005264.1 + 132864 0.68 0.891447
Target:  5'- aCGAgCAGCuuacgAUCCUUACCGCGAuccuAGGa -3'
miRNA:   3'- -GCU-GUCG-----UAGGGAUGGCGCUcu--UCCc -5'
24366 5' -55.3 NC_005264.1 + 7927 0.68 0.870542
Target:  5'- gGAC-GUAaCgCUGCCGCGAGAcgagccggAGGGg -3'
miRNA:   3'- gCUGuCGUaGgGAUGGCGCUCU--------UCCC- -5'
24366 5' -55.3 NC_005264.1 + 130957 0.68 0.881934
Target:  5'- aCGuCAGCAUCgacaaggcgugcgCCgACCGCGAGGcgcuggaagauuucAGGGg -3'
miRNA:   3'- -GCuGUCGUAG-------------GGaUGGCGCUCU--------------UCCC- -5'
24366 5' -55.3 NC_005264.1 + 131577 0.68 0.891447
Target:  5'- gGGgGGCGUUCgccgcgaagaUACCGCuGAGggGGGa -3'
miRNA:   3'- gCUgUCGUAGGg---------AUGGCG-CUCuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 92130 0.66 0.932303
Target:  5'- -cGCAGCGUUCggcgACCGaguGGGAGGGGa -3'
miRNA:   3'- gcUGUCGUAGGga--UGGCg--CUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 25196 0.66 0.946318
Target:  5'- uGAgGGCcgCCCUGuguCUGuCGAGcGGGGa -3'
miRNA:   3'- gCUgUCGuaGGGAU---GGC-GCUCuUCCC- -5'
24366 5' -55.3 NC_005264.1 + 16641 0.69 0.831593
Target:  5'- uCGAguGCGUCUCUGgUGCgGAGcgcGAGGGa -3'
miRNA:   3'- -GCUguCGUAGGGAUgGCG-CUC---UUCCC- -5'
24366 5' -55.3 NC_005264.1 + 73079 0.66 0.946318
Target:  5'- cCGcGCGGCAUCUCUACUuCGAcGGGuGGGa -3'
miRNA:   3'- -GC-UGUCGUAGGGAUGGcGCU-CUU-CCC- -5'
24366 5' -55.3 NC_005264.1 + 121782 0.66 0.946318
Target:  5'- aCGGC-GCGUCCCccggcgccgUACCGUcuGGGGAGuGGu -3'
miRNA:   3'- -GCUGuCGUAGGG---------AUGGCG--CUCUUC-CC- -5'
24366 5' -55.3 NC_005264.1 + 162506 0.68 0.884696
Target:  5'- uGGCGGUugucgCCaUUGCCGCGAuuuGggGGGu -3'
miRNA:   3'- gCUGUCGua---GG-GAUGGCGCU---CuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 124850 0.68 0.884009
Target:  5'- cCGGCGGCGguggccgccacUCgCCUgGCCGCGGuuaucgcccuaucGAGGGGg -3'
miRNA:   3'- -GCUGUCGU-----------AG-GGA-UGGCGCU-------------CUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.