miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24366 5' -55.3 NC_005264.1 + 162506 0.68 0.884696
Target:  5'- uGGCGGUugucgCCaUUGCCGCGAuuuGggGGGu -3'
miRNA:   3'- gCUGUCGua---GG-GAUGGCGCU---CuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 161821 0.73 0.638828
Target:  5'- cCGGCGgaauagguaaaaccGguUCCCgccgguCCGCGAGggGGGa -3'
miRNA:   3'- -GCUGU--------------CguAGGGau----GGCGCUCuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 160509 0.66 0.941878
Target:  5'- cCGAaaaAGUAcauUCCUUacgcGCCGCuGGGggGGGa -3'
miRNA:   3'- -GCUg--UCGU---AGGGA----UGGCG-CUCuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 159178 0.66 0.932303
Target:  5'- aGACGGCcgCCC-AUCGuCGAGAcGGcGg -3'
miRNA:   3'- gCUGUCGuaGGGaUGGC-GCUCUuCC-C- -5'
24366 5' -55.3 NC_005264.1 + 158697 0.66 0.932303
Target:  5'- gCGGCaAGCAUCgCgacaagcgGCCGUGuuuggcAGAGGGGa -3'
miRNA:   3'- -GCUG-UCGUAGgGa-------UGGCGC------UCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 156607 0.74 0.551296
Target:  5'- aGGCGGCAagUCUCgcggcgGCCGCGGcGggGGGu -3'
miRNA:   3'- gCUGUCGU--AGGGa-----UGGCGCU-CuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 155447 0.66 0.954512
Target:  5'- aCGACGGCG-CCgggGCCGCGAucGAAGa- -3'
miRNA:   3'- -GCUGUCGUaGGga-UGGCGCU--CUUCcc -5'
24366 5' -55.3 NC_005264.1 + 154574 0.67 0.904275
Target:  5'- uGuuGGCGUUCCUgaaccaacacGCCaGCGAaGAGGGGg -3'
miRNA:   3'- gCugUCGUAGGGA----------UGG-CGCU-CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 153096 0.69 0.846964
Target:  5'- aCGGCGGCuUgCCUGCCGcCGAGucagaaaGAGGa -3'
miRNA:   3'- -GCUGUCGuAgGGAUGGC-GCUC-------UUCCc -5'
24366 5' -55.3 NC_005264.1 + 151195 0.74 0.561227
Target:  5'- aCGACAGCAgCCCUGCCGCGcuGAu--- -3'
miRNA:   3'- -GCUGUCGUaGGGAUGGCGCu-CUuccc -5'
24366 5' -55.3 NC_005264.1 + 150539 0.69 0.85555
Target:  5'- aGGCGGC-UCCagGCUcggGCGGGGAGGGc -3'
miRNA:   3'- gCUGUCGuAGGgaUGG---CGCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 148177 0.71 0.750987
Target:  5'- cCGGCAGCAuggUCUCUGCCGUugccgcGAGGGa -3'
miRNA:   3'- -GCUGUCGU---AGGGAUGGCGcuc---UUCCC- -5'
24366 5' -55.3 NC_005264.1 + 147148 0.66 0.936727
Target:  5'- uCGACGGCGUUCUg--UGCGAGGAgcauuuuGGGg -3'
miRNA:   3'- -GCUGUCGUAGGGaugGCGCUCUU-------CCC- -5'
24366 5' -55.3 NC_005264.1 + 145083 0.69 0.831593
Target:  5'- gGGCAGCucUCCUUGCCGCGAacuuGGc -3'
miRNA:   3'- gCUGUCGu-AGGGAUGGCGCUcuu-CCc -5'
24366 5' -55.3 NC_005264.1 + 136676 0.68 0.877727
Target:  5'- cCGACAGUgccgcgaaaGUCCUcGCCGCGGccuGGGa -3'
miRNA:   3'- -GCUGUCG---------UAGGGaUGGCGCUcuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 135227 0.67 0.921792
Target:  5'- aGAUGGCGUCCUgugacgACCGUGaAGAuGGa -3'
miRNA:   3'- gCUGUCGUAGGGa-----UGGCGC-UCUuCCc -5'
24366 5' -55.3 NC_005264.1 + 133077 1.1 0.003331
Target:  5'- cCGACAGCAUCCCUACCGCGAGAAGGGu -3'
miRNA:   3'- -GCUGUCGUAGGGAUGGCGCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 132864 0.68 0.891447
Target:  5'- aCGAgCAGCuuacgAUCCUUACCGCGAuccuAGGa -3'
miRNA:   3'- -GCU-GUCG-----UAGGGAUGGCGCUcu--UCCc -5'
24366 5' -55.3 NC_005264.1 + 131577 0.68 0.891447
Target:  5'- gGGgGGCGUUCgccgcgaagaUACCGCuGAGggGGGa -3'
miRNA:   3'- gCUgUCGUAGGg---------AUGGCG-CUCuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 130957 0.68 0.881934
Target:  5'- aCGuCAGCAUCgacaaggcgugcgCCgACCGCGAGGcgcuggaagauuucAGGGg -3'
miRNA:   3'- -GCuGUCGUAG-------------GGaUGGCGCUCU--------------UCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.