Results 41 - 59 of 59 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 150539 | 0.69 | 0.85555 |
Target: 5'- aGGCGGC-UCCagGCUcggGCGGGGAGGGc -3' miRNA: 3'- gCUGUCGuAGGgaUGG---CGCUCUUCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 153096 | 0.69 | 0.846964 |
Target: 5'- aCGGCGGCuUgCCUGCCGcCGAGucagaaaGAGGa -3' miRNA: 3'- -GCUGUCGuAgGGAUGGC-GCUC-------UUCCc -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 145083 | 0.69 | 0.831593 |
Target: 5'- gGGCAGCucUCCUUGCCGCGAacuuGGc -3' miRNA: 3'- gCUGUCGu-AGGGAUGGCGCUcuu-CCc -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 16641 | 0.69 | 0.831593 |
Target: 5'- uCGAguGCGUCUCUGgUGCgGAGcgcGAGGGa -3' miRNA: 3'- -GCUguCGUAGGGAUgGCG-CUC---UUCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 115638 | 0.69 | 0.830766 |
Target: 5'- uCGACGGCcguggccccgcucAUCCCaggcuugACCGuCGAGGAGGc -3' miRNA: 3'- -GCUGUCG-------------UAGGGa------UGGC-GCUCUUCCc -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 100839 | 0.7 | 0.800752 |
Target: 5'- aCGACGGCGaguucUCCCUcgACgcaugggaccaggcgCGCGAcGAGGGGg -3' miRNA: 3'- -GCUGUCGU-----AGGGA--UG---------------GCGCU-CUUCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 1315 | 0.7 | 0.797199 |
Target: 5'- uGuACGGCgAUCCCUAaacCCaGCGAGcGGGGa -3' miRNA: 3'- gC-UGUCG-UAGGGAU---GG-CGCUCuUCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 120342 | 0.7 | 0.797199 |
Target: 5'- uGuACGGCgAUCCCUAaacCCaGCGAGcGGGGa -3' miRNA: 3'- gC-UGUCG-UAGGGAU---GG-CGCUCuUCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 50772 | 0.7 | 0.769841 |
Target: 5'- gGGCAacGCAUccaaggcgaCCCguuCCGCGAGAAGGa -3' miRNA: 3'- gCUGU--CGUA---------GGGau-GGCGCUCUUCCc -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 148177 | 0.71 | 0.750987 |
Target: 5'- cCGGCAGCAuggUCUCUGCCGUugccgcGAGGGa -3' miRNA: 3'- -GCUGUCGU---AGGGAUGGCGcuc---UUCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 124378 | 0.72 | 0.692251 |
Target: 5'- gCGGCAGCA-UgCUACCGUGcGGAAGGa -3' miRNA: 3'- -GCUGUCGUaGgGAUGGCGC-UCUUCCc -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 63161 | 0.72 | 0.6621 |
Target: 5'- gCGAgGGCAUgaaCCCUGCCGCGu---GGGc -3' miRNA: 3'- -GCUgUCGUA---GGGAUGGCGCucuuCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 42795 | 0.73 | 0.638828 |
Target: 5'- cCGGCGgaauagguaaaaccGguUCCCgccgguCCGCGAGggGGGa -3' miRNA: 3'- -GCUGU--------------CguAGGGau----GGCGCUCuuCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 161821 | 0.73 | 0.638828 |
Target: 5'- cCGGCGgaauagguaaaaccGguUCCCgccgguCCGCGAGggGGGa -3' miRNA: 3'- -GCUGU--------------CguAGGGau----GGCGCUCuuCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 93057 | 0.74 | 0.591285 |
Target: 5'- aGAgGGC-UgUCUGCUGCGGGAGGGGc -3' miRNA: 3'- gCUgUCGuAgGGAUGGCGCUCUUCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 151195 | 0.74 | 0.561227 |
Target: 5'- aCGACAGCAgCCCUGCCGCGcuGAu--- -3' miRNA: 3'- -GCUGUCGUaGGGAUGGCGCu-CUuccc -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 156607 | 0.74 | 0.551296 |
Target: 5'- aGGCGGCAagUCUCgcggcgGCCGCGGcGggGGGu -3' miRNA: 3'- gCUGUCGU--AGGGa-----UGGCGCU-CuuCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 37580 | 0.74 | 0.551296 |
Target: 5'- aGGCGGCAagUCUCgcggcgGCCGCGGcGggGGGu -3' miRNA: 3'- gCUGUCGU--AGGGa-----UGGCGCU-CuuCCC- -5' |
|||||||
24366 | 5' | -55.3 | NC_005264.1 | + | 133077 | 1.1 | 0.003331 |
Target: 5'- cCGACAGCAUCCCUACCGCGAGAAGGGu -3' miRNA: 3'- -GCUGUCGUAGGGAUGGCGCUCUUCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home