miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24366 5' -55.3 NC_005264.1 + 65568 0.67 0.904275
Target:  5'- aGGCAGCggCCaCUACCGUGccAAGGc -3'
miRNA:   3'- gCUGUCGuaGG-GAUGGCGCucUUCCc -5'
24366 5' -55.3 NC_005264.1 + 35547 0.67 0.904275
Target:  5'- uGuuGGCGUUCCUgaaccaacacGCCaGCGAaGAGGGGg -3'
miRNA:   3'- gCugUCGUAGGGA----------UGG-CGCU-CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 5075 0.67 0.904275
Target:  5'- aGGCGGCcagCCCguCCG-GGGAGGGGu -3'
miRNA:   3'- gCUGUCGua-GGGauGGCgCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 154574 0.67 0.904275
Target:  5'- uGuuGGCGUUCCUgaaccaacacGCCaGCGAaGAGGGGg -3'
miRNA:   3'- gCugUCGUAGGGA----------UGG-CGCU-CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 124102 0.67 0.904275
Target:  5'- aGGCGGCcagCCCguCCG-GGGAGGGGu -3'
miRNA:   3'- gCUGUCGua-GGGauGGCgCUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 132864 0.68 0.891447
Target:  5'- aCGAgCAGCuuacgAUCCUUACCGCGAuccuAGGa -3'
miRNA:   3'- -GCU-GUCG-----UAGGGAUGGCGCUcu--UCCc -5'
24366 5' -55.3 NC_005264.1 + 12550 0.68 0.891447
Target:  5'- gGGgGGCGUUCgccgcgaagaUACCGCuGAGggGGGa -3'
miRNA:   3'- gCUgUCGUAGGg---------AUGGCG-CUCuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 131577 0.68 0.891447
Target:  5'- gGGgGGCGUUCgccgcgaagaUACCGCuGAGggGGGa -3'
miRNA:   3'- gCUgUCGUAGGg---------AUGGCG-CUCuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 162506 0.68 0.884696
Target:  5'- uGGCGGUugucgCCaUUGCCGCGAuuuGggGGGu -3'
miRNA:   3'- gCUGUCGua---GG-GAUGGCGCU---CuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 43479 0.68 0.884696
Target:  5'- uGGCGGUugucgCCaUUGCCGCGAuuuGggGGGu -3'
miRNA:   3'- gCUGUCGua---GG-GAUGGCGCU---CuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 124850 0.68 0.884009
Target:  5'- cCGGCGGCGguggccgccacUCgCCUgGCCGCGGuuaucgcccuaucGAGGGGg -3'
miRNA:   3'- -GCUGUCGU-----------AG-GGA-UGGCGCU-------------CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 5824 0.68 0.884009
Target:  5'- cCGGCGGCGguggccgccacUCgCCUgGCCGCGGuuaucgcccuaucGAGGGGg -3'
miRNA:   3'- -GCUGUCGU-----------AG-GGA-UGGCGCU-------------CUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 3166 0.68 0.882628
Target:  5'- -aACGGCGaCCCU-CCGCGucgcgacggcgcggGGAAGGGc -3'
miRNA:   3'- gcUGUCGUaGGGAuGGCGC--------------UCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 122193 0.68 0.882628
Target:  5'- -aACGGCGaCCCU-CCGCGucgcgacggcgcggGGAAGGGc -3'
miRNA:   3'- gcUGUCGUaGGGAuGGCGC--------------UCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 130957 0.68 0.881934
Target:  5'- aCGuCAGCAUCgacaaggcgugcgCCgACCGCGAGGcgcuggaagauuucAGGGg -3'
miRNA:   3'- -GCuGUCGUAG-------------GGaUGGCGCUCU--------------UCCC- -5'
24366 5' -55.3 NC_005264.1 + 37560 0.68 0.877727
Target:  5'- gCGACAGCGcgCC--GCCGCG-GAGGGc -3'
miRNA:   3'- -GCUGUCGUa-GGgaUGGCGCuCUUCCc -5'
24366 5' -55.3 NC_005264.1 + 136676 0.68 0.877727
Target:  5'- cCGACAGUgccgcgaaaGUCCUcGCCGCGGccuGGGa -3'
miRNA:   3'- -GCUGUCG---------UAGGGaUGGCGCUcuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 126953 0.68 0.870542
Target:  5'- gGAC-GUAaCgCUGCCGCGAGAcgagccggAGGGg -3'
miRNA:   3'- gCUGuCGUaGgGAUGGCGCUCU--------UCCC- -5'
24366 5' -55.3 NC_005264.1 + 7927 0.68 0.870542
Target:  5'- gGAC-GUAaCgCUGCCGCGAGAcgagccggAGGGg -3'
miRNA:   3'- gCUGuCGUaGgGAUGGCGCUCU--------UCCC- -5'
24366 5' -55.3 NC_005264.1 + 150539 0.69 0.85555
Target:  5'- aGGCGGC-UCCagGCUcggGCGGGGAGGGc -3'
miRNA:   3'- gCUGUCGuAGGgaUGG---CGCUCUUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.