miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24367 3' -62.1 NC_005264.1 + 160382 0.67 0.56505
Target:  5'- cCAGCacgcuaACGUGuGCCGCaAGGaagaguGCAgGCUGCu -3'
miRNA:   3'- -GUCGg-----UGCAC-CGGCG-UCC------CGU-CGACG- -5'
24367 3' -62.1 NC_005264.1 + 70988 0.67 0.56505
Target:  5'- -uGUCGCccGGUCGCAGGG--GCUGCg -3'
miRNA:   3'- guCGGUGcaCCGGCGUCCCguCGACG- -5'
24367 3' -62.1 NC_005264.1 + 59723 0.67 0.562128
Target:  5'- cCGGCgCGCaUGGCuCGUuagaagagucauggGGcGGCGGCUGCg -3'
miRNA:   3'- -GUCG-GUGcACCG-GCG--------------UC-CCGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 107624 0.67 0.555326
Target:  5'- uCAGCgGCGUGuuccaccauaGCCGCAagacGCGGCUGUa -3'
miRNA:   3'- -GUCGgUGCAC----------CGGCGUcc--CGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 3824 0.67 0.554356
Target:  5'- gGGCCcggGCGgGGCCGCAGGaggaaauacgaccGCAGaCUcGCa -3'
miRNA:   3'- gUCGG---UGCaCCGGCGUCC-------------CGUC-GA-CG- -5'
24367 3' -62.1 NC_005264.1 + 37192 0.67 0.554356
Target:  5'- --cCCGCGUGGCCGU-GGGCAuaauuucccacgcGCUcGCc -3'
miRNA:   3'- gucGGUGCACCGGCGuCCCGU-------------CGA-CG- -5'
24367 3' -62.1 NC_005264.1 + 156219 0.67 0.554356
Target:  5'- --cCCGCGUGGCCGU-GGGCAuaauuucccacgcGCUcGCc -3'
miRNA:   3'- gucGGUGCACCGGCGuCCCGU-------------CGA-CG- -5'
24367 3' -62.1 NC_005264.1 + 122850 0.67 0.554356
Target:  5'- gGGCCcggGCGgGGCCGCAGGaggaaauacgaccGCAGaCUcGCa -3'
miRNA:   3'- gUCGG---UGCaCCGGCGUCC-------------CGUC-GA-CG- -5'
24367 3' -62.1 NC_005264.1 + 16425 0.67 0.545651
Target:  5'- gGGCCGCucgacuGCCGCGGGGC--CUGCc -3'
miRNA:   3'- gUCGGUGcac---CGGCGUCCCGucGACG- -5'
24367 3' -62.1 NC_005264.1 + 95343 0.67 0.545651
Target:  5'- -cGCCGCGaaacGGaCUcgGCGGGGCGGCgGCc -3'
miRNA:   3'- guCGGUGCa---CC-GG--CGUCCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 1668 0.67 0.545651
Target:  5'- gGGCgACGguggGGCaaaGUauuGGGGCGGcCUGCa -3'
miRNA:   3'- gUCGgUGCa---CCGg--CG---UCCCGUC-GACG- -5'
24367 3' -62.1 NC_005264.1 + 12281 0.67 0.536031
Target:  5'- -uGCCGuacCcUGGCgGCAGGGCGG-UGCg -3'
miRNA:   3'- guCGGU---GcACCGgCGUCCCGUCgACG- -5'
24367 3' -62.1 NC_005264.1 + 1212 0.67 0.536031
Target:  5'- gCGGCCA--UGGCUGCGGGGUuGCa-- -3'
miRNA:   3'- -GUCGGUgcACCGGCGUCCCGuCGacg -5'
24367 3' -62.1 NC_005264.1 + 120239 0.67 0.536031
Target:  5'- gCGGCCA--UGGCUGCGGGGUuGCa-- -3'
miRNA:   3'- -GUCGGUgcACCGGCGUCCCGuCGacg -5'
24367 3' -62.1 NC_005264.1 + 21518 0.67 0.536031
Target:  5'- -cGUCGCaGUGGgCGCAGGuGUAGUUGa -3'
miRNA:   3'- guCGGUG-CACCgGCGUCC-CGUCGACg -5'
24367 3' -62.1 NC_005264.1 + 122675 0.67 0.534114
Target:  5'- -cGUCGCGaUGGCCGCcgucucgacgauGGGCGGCcGUc -3'
miRNA:   3'- guCGGUGC-ACCGGCGu-----------CCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 3648 0.67 0.534114
Target:  5'- -cGUCGCGaUGGCCGCcgucucgacgauGGGCGGCcGUc -3'
miRNA:   3'- guCGGUGC-ACCGGCGu-----------CCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 127086 0.68 0.526471
Target:  5'- uCAcCCACGUcgcGGCCGCAgucGGGCAcggGCgGCg -3'
miRNA:   3'- -GUcGGUGCA---CCGGCGU---CCCGU---CGaCG- -5'
24367 3' -62.1 NC_005264.1 + 60004 0.68 0.526471
Target:  5'- aCGGCCGCGUGGCCGCGGccCAa---- -3'
miRNA:   3'- -GUCGGUGCACCGGCGUCccGUcgacg -5'
24367 3' -62.1 NC_005264.1 + 127321 0.68 0.526471
Target:  5'- -cGCC-CGUGGgCGacgGGGGCAcCUGCg -3'
miRNA:   3'- guCGGuGCACCgGCg--UCCCGUcGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.