Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24367 | 3' | -62.1 | NC_005264.1 | + | 79399 | 0.66 | 0.621137 |
Target: 5'- -cGCCGCGggcguggcgaGGCCGCGgcggaacccagcguGGGCGG-UGCg -3' miRNA: 3'- guCGGUGCa---------CCGGCGU--------------CCCGUCgACG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 122778 | 0.66 | 0.614211 |
Target: 5'- gGGCCucuu-GCCGcCGGGGC-GCUGCg -3' miRNA: 3'- gUCGGugcacCGGC-GUCCCGuCGACG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 3752 | 0.66 | 0.614211 |
Target: 5'- gGGCCucuu-GCCGcCGGGGC-GCUGCg -3' miRNA: 3'- gUCGGugcacCGGC-GUCCCGuCGACG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 102875 | 0.66 | 0.614211 |
Target: 5'- -cGCCGCGUGGCUGa---GCGGC-GCg -3' miRNA: 3'- guCGGUGCACCGGCguccCGUCGaCG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 128913 | 0.66 | 0.613222 |
Target: 5'- -cGCCACGgccuucccagcccUGGCgGCAGaaaGGCGGC-GCu -3' miRNA: 3'- guCGGUGC-------------ACCGgCGUC---CCGUCGaCG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 9887 | 0.66 | 0.613222 |
Target: 5'- -cGCCACGgccuucccagcccUGGCgGCAGaaaGGCGGC-GCu -3' miRNA: 3'- guCGGUGC-------------ACCGgCGUC---CCGUCGaCG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 100008 | 0.66 | 0.610256 |
Target: 5'- -cGCgACGcggaaauaaagaaGGCCGCGGcGGCGcuGCUGCg -3' miRNA: 3'- guCGgUGCa------------CCGGCGUC-CCGU--CGACG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 77456 | 0.66 | 0.604327 |
Target: 5'- --aCCGCGUGGUCGCGGuacacaGCGGCUcggGCu -3' miRNA: 3'- gucGGUGCACCGGCGUCc-----CGUCGA---CG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 68330 | 0.66 | 0.604327 |
Target: 5'- --cCCACGUGGCCGa----CGGCUGCa -3' miRNA: 3'- gucGGUGCACCGGCgucccGUCGACG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 25215 | 0.66 | 0.604327 |
Target: 5'- -cGCaCACgGUGGCC--AGGGCAGUgccgGCa -3' miRNA: 3'- guCG-GUG-CACCGGcgUCCCGUCGa---CG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 139432 | 0.66 | 0.604327 |
Target: 5'- uGGCguaCGCGUgcucGGCCGUcacaagAGGGCGGCcagGCg -3' miRNA: 3'- gUCG---GUGCA----CCGGCG------UCCCGUCGa--CG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 75185 | 0.66 | 0.60334 |
Target: 5'- -uGCC-CGUuGCCGcCAGGucccgcgccccacGCGGCUGCa -3' miRNA: 3'- guCGGuGCAcCGGC-GUCC-------------CGUCGACG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 100018 | 0.66 | 0.594463 |
Target: 5'- --cCCAuagUGUGGCCGUccGGGGgaacUAGCUGCg -3' miRNA: 3'- gucGGU---GCACCGGCG--UCCC----GUCGACG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 10987 | 0.66 | 0.594463 |
Target: 5'- --cCCACGUGucGCCGCcGGaGCGGCgGCc -3' miRNA: 3'- gucGGUGCAC--CGGCGuCC-CGUCGaCG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 42296 | 0.66 | 0.594463 |
Target: 5'- uCGGCUucCGgGGCCgucGCAGGGCuGCcgGCa -3' miRNA: 3'- -GUCGGu-GCaCCGG---CGUCCCGuCGa-CG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 83126 | 0.66 | 0.594463 |
Target: 5'- -cGCCAa--GGCCGCGGaGGCGcGuCUGCc -3' miRNA: 3'- guCGGUgcaCCGGCGUC-CCGU-C-GACG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 26353 | 0.66 | 0.594463 |
Target: 5'- uUAGUCuuGUGcGCCGC--GGCAgGCUGCg -3' miRNA: 3'- -GUCGGugCAC-CGGCGucCCGU-CGACG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 113684 | 0.67 | 0.584625 |
Target: 5'- -uGCCGCGgccGCUGUGGGGCAuGUcuUGCa -3' miRNA: 3'- guCGGUGCac-CGGCGUCCCGU-CG--ACG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 109617 | 0.67 | 0.574818 |
Target: 5'- aAGCaaaugGCGUGGgCGgGGGGCgcgacGGUUGCa -3' miRNA: 3'- gUCGg----UGCACCgGCgUCCCG-----UCGACG- -5' |
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24367 | 3' | -62.1 | NC_005264.1 | + | 69053 | 0.67 | 0.574818 |
Target: 5'- uGGCCGC--GGCCGCcGGGCAGg--- -3' miRNA: 3'- gUCGGUGcaCCGGCGuCCCGUCgacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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