miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24367 3' -62.1 NC_005264.1 + 86164 0.72 0.310141
Target:  5'- aCAGCCugGUGGCCGUGGaaGCAuuGgaGCg -3'
miRNA:   3'- -GUCGGugCACCGGCGUCc-CGU--CgaCG- -5'
24367 3' -62.1 NC_005264.1 + 68246 0.72 0.310141
Target:  5'- aAGCCAUGcccGcGCCGC-GGGCGGcCUGCu -3'
miRNA:   3'- gUCGGUGCa--C-CGGCGuCCCGUC-GACG- -5'
24367 3' -62.1 NC_005264.1 + 125840 0.71 0.324163
Target:  5'- -uGUUGCuGUGGCCaGCAGGGCuGCUGa -3'
miRNA:   3'- guCGGUG-CACCGG-CGUCCCGuCGACg -5'
24367 3' -62.1 NC_005264.1 + 119284 0.71 0.331349
Target:  5'- -cGCCGguugcuCGcGGUgGCuGGGCAGCUGCa -3'
miRNA:   3'- guCGGU------GCaCCGgCGuCCCGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 61809 0.71 0.338652
Target:  5'- gGGCCGCG-GGCauCGCcGGGCAGUgccugGCu -3'
miRNA:   3'- gUCGGUGCaCCG--GCGuCCCGUCGa----CG- -5'
24367 3' -62.1 NC_005264.1 + 76295 0.71 0.353605
Target:  5'- --aCCAUcUGGgCGCGGGGgGGCUGCu -3'
miRNA:   3'- gucGGUGcACCgGCGUCCCgUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 95778 0.71 0.360485
Target:  5'- gGGCUugGUGGCCuuccucaGguGGGCGGUgaGCc -3'
miRNA:   3'- gUCGGugCACCGG-------CguCCCGUCGa-CG- -5'
24367 3' -62.1 NC_005264.1 + 91736 0.71 0.361255
Target:  5'- -uGCuCACcagGGCCG-AGGGCGGCUGUu -3'
miRNA:   3'- guCG-GUGca-CCGGCgUCCCGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 106941 0.7 0.384083
Target:  5'- aCAGCUGCGgcGGCCGCAGgaucugaGGCcuGUUGCg -3'
miRNA:   3'- -GUCGGUGCa-CCGGCGUC-------CCGu-CGACG- -5'
24367 3' -62.1 NC_005264.1 + 149575 0.7 0.384887
Target:  5'- aCAGCCcCG-GGCgG-AGGGgGGCUGCu -3'
miRNA:   3'- -GUCGGuGCaCCGgCgUCCCgUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 106008 0.7 0.384887
Target:  5'- gCAGCCACGa-GCCGCuagcuAGGGCcGCcGCg -3'
miRNA:   3'- -GUCGGUGCacCGGCG-----UCCCGuCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 69770 0.7 0.391359
Target:  5'- -uGCCACGaauucgggcggaGGCCGCAuGGCAGCgcaGCa -3'
miRNA:   3'- guCGGUGCa-----------CCGGCGUcCCGUCGa--CG- -5'
24367 3' -62.1 NC_005264.1 + 123493 0.7 0.392989
Target:  5'- uGGCCGCGcGGuuGCuGGGCGauguGCUcGCg -3'
miRNA:   3'- gUCGGUGCaCCggCGuCCCGU----CGA-CG- -5'
24367 3' -62.1 NC_005264.1 + 52326 0.7 0.40952
Target:  5'- gCAGCUucagGGUCGCuGGGCGgGCUGCc -3'
miRNA:   3'- -GUCGGugcaCCGGCGuCCCGU-CGACG- -5'
24367 3' -62.1 NC_005264.1 + 124426 0.7 0.417947
Target:  5'- -uGCCAgG-GGCCaGCAGGGCGuacGCgGCa -3'
miRNA:   3'- guCGGUgCaCCGG-CGUCCCGU---CGaCG- -5'
24367 3' -62.1 NC_005264.1 + 5399 0.7 0.417947
Target:  5'- -uGCCAgG-GGCCaGCAGGGCGuacGCgGCa -3'
miRNA:   3'- guCGGUgCaCCGG-CGUCCCGU---CGaCG- -5'
24367 3' -62.1 NC_005264.1 + 75400 0.69 0.426478
Target:  5'- -cGCCAcCGUcugcgcGGCCGC-GGGCAGUguacgGCg -3'
miRNA:   3'- guCGGU-GCA------CCGGCGuCCCGUCGa----CG- -5'
24367 3' -62.1 NC_005264.1 + 148898 0.69 0.434244
Target:  5'- -cGCCGCGUGGCauagacuUGCuGcGGCAGCuuUGCc -3'
miRNA:   3'- guCGGUGCACCG-------GCGuC-CCGUCG--ACG- -5'
24367 3' -62.1 NC_005264.1 + 154494 0.69 0.435112
Target:  5'- aAGCCACGguuaaGGuCUGCGGGGCGcacauGCcGCg -3'
miRNA:   3'- gUCGGUGCa----CC-GGCGUCCCGU-----CGaCG- -5'
24367 3' -62.1 NC_005264.1 + 24947 0.69 0.443846
Target:  5'- aAGCaCAUGUG-CCGUaccAGGGC-GCUGCg -3'
miRNA:   3'- gUCG-GUGCACcGGCG---UCCCGuCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.