miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24367 3' -62.1 NC_005264.1 + 132487 1.1 0.000647
Target:  5'- gCAGCCACGUGGCCGCAGGGCAGCUGCu -3'
miRNA:   3'- -GUCGGUGCACCGGCGUCCCGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 15575 0.8 0.09212
Target:  5'- gCAGCU-CGUGGCCaagcuuGCGGGcGCAGCUGCg -3'
miRNA:   3'- -GUCGGuGCACCGG------CGUCC-CGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 123293 0.78 0.121858
Target:  5'- -uGCCGCGcgGGaaCCGCGGGGCGGCgGCa -3'
miRNA:   3'- guCGGUGCa-CC--GGCGUCCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 4266 0.78 0.121858
Target:  5'- -uGCCGCGcgGGaaCCGCGGGGCGGCgGCa -3'
miRNA:   3'- guCGGUGCa-CC--GGCGUCCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 87642 0.78 0.130418
Target:  5'- gCAGCCGCGUggggcgcgggaccuGGCgGCAacGGGCAGCUGa -3'
miRNA:   3'- -GUCGGUGCA--------------CCGgCGU--CCCGUCGACg -5'
24367 3' -62.1 NC_005264.1 + 132394 0.76 0.15796
Target:  5'- uGGUgaACGUGGCCGCAGGcacgagcuacaagccGCGGCUGUa -3'
miRNA:   3'- gUCGg-UGCACCGGCGUCC---------------CGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 3611 0.76 0.172563
Target:  5'- -cGCCGCGgggGGCCGCgAGGGCGGgC-GCg -3'
miRNA:   3'- guCGGUGCa--CCGGCG-UCCCGUC-GaCG- -5'
24367 3' -62.1 NC_005264.1 + 122638 0.76 0.172563
Target:  5'- -cGCCGCGgggGGCCGCgAGGGCGGgC-GCg -3'
miRNA:   3'- guCGGUGCa--CCGGCG-UCCCGUC-GaCG- -5'
24367 3' -62.1 NC_005264.1 + 16481 0.76 0.176828
Target:  5'- gCAGCCGCgGUGGCCuGCGGGGUcgaGGCacgccgGCg -3'
miRNA:   3'- -GUCGGUG-CACCGG-CGUCCCG---UCGa-----CG- -5'
24367 3' -62.1 NC_005264.1 + 67626 0.75 0.18564
Target:  5'- -cGCCACGcGGgCGCAGGGguGUccUGCg -3'
miRNA:   3'- guCGGUGCaCCgGCGUCCCguCG--ACG- -5'
24367 3' -62.1 NC_005264.1 + 3966 0.75 0.203942
Target:  5'- uGGCCGCGccGGCCggcuuuaccgccaGCAGGGCGGCacaUGCc -3'
miRNA:   3'- gUCGGUGCa-CCGG-------------CGUCCCGUCG---ACG- -5'
24367 3' -62.1 NC_005264.1 + 116402 0.75 0.204431
Target:  5'- aAGCCGCa-GGCCgacgucgagcGCAGGGCGGCgUGCa -3'
miRNA:   3'- gUCGGUGcaCCGG----------CGUCCCGUCG-ACG- -5'
24367 3' -62.1 NC_005264.1 + 122992 0.75 0.207885
Target:  5'- uGGCCGCGccGGCCggcuuuaccgccaaGCAGGGCGGCacaUGCc -3'
miRNA:   3'- gUCGGUGCa-CCGG--------------CGUCCCGUCG---ACG- -5'
24367 3' -62.1 NC_005264.1 + 19428 0.75 0.20938
Target:  5'- -cGCCGggUGUGGCCGCGGGGC-GCggGUg -3'
miRNA:   3'- guCGGU--GCACCGGCGUCCCGuCGa-CG- -5'
24367 3' -62.1 NC_005264.1 + 84750 0.74 0.224849
Target:  5'- gAGUCACGU-GCCGCAacgacGGGCAGC-GCg -3'
miRNA:   3'- gUCGGUGCAcCGGCGU-----CCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 85025 0.74 0.224849
Target:  5'- aGGCCAUGUG-CCGCGGGGCAuucgGCa -3'
miRNA:   3'- gUCGGUGCACcGGCGUCCCGUcga-CG- -5'
24367 3' -62.1 NC_005264.1 + 94522 0.74 0.235692
Target:  5'- uCGGCCACGUGGg---AGGGCAGCgGCg -3'
miRNA:   3'- -GUCGGUGCACCggcgUCCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 5272 0.73 0.277123
Target:  5'- gAGUCGCGgccGGaCgGCGGGGCGGCgGCu -3'
miRNA:   3'- gUCGGUGCa--CC-GgCGUCCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 124299 0.73 0.277123
Target:  5'- gAGUCGCGgccGGaCgGCGGGGCGGCgGCu -3'
miRNA:   3'- gUCGGUGCa--CC-GgCGUCCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 100076 0.72 0.289329
Target:  5'- gGGCCuaggGCGUagcauggcGGCCGCGGGGCucagcgacgacgcGGUUGCg -3'
miRNA:   3'- gUCGG----UGCA--------CCGGCGUCCCG-------------UCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.