miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24367 3' -62.1 NC_005264.1 + 161639 0.69 0.470623
Target:  5'- gCAGCCA--UGGCCGCGGacgcccGGUccGCUGCg -3'
miRNA:   3'- -GUCGGUgcACCGGCGUC------CCGu-CGACG- -5'
24367 3' -62.1 NC_005264.1 + 69770 0.7 0.391359
Target:  5'- -uGCCACGaauucgggcggaGGCCGCAuGGCAGCgcaGCa -3'
miRNA:   3'- guCGGUGCa-----------CCGGCGUcCCGUCGa--CG- -5'
24367 3' -62.1 NC_005264.1 + 52326 0.7 0.40952
Target:  5'- gCAGCUucagGGUCGCuGGGCGgGCUGCc -3'
miRNA:   3'- -GUCGGugcaCCGGCGuCCCGU-CGACG- -5'
24367 3' -62.1 NC_005264.1 + 124426 0.7 0.417947
Target:  5'- -uGCCAgG-GGCCaGCAGGGCGuacGCgGCa -3'
miRNA:   3'- guCGGUgCaCCGG-CGUCCCGU---CGaCG- -5'
24367 3' -62.1 NC_005264.1 + 92996 0.69 0.443846
Target:  5'- gCAG-CACGcGGCCGUagcgGGGGCAGUcaagGCa -3'
miRNA:   3'- -GUCgGUGCaCCGGCG----UCCCGUCGa---CG- -5'
24367 3' -62.1 NC_005264.1 + 60615 0.69 0.452678
Target:  5'- -uGCCGCGgcagccGGCucgCGCAGGaGCAGCaGCu -3'
miRNA:   3'- guCGGUGCa-----CCG---GCGUCC-CGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 84463 0.69 0.452678
Target:  5'- -uGCCGCGU-GCauCGGGuGCGGCUGCu -3'
miRNA:   3'- guCGGUGCAcCGgcGUCC-CGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 131213 0.69 0.461604
Target:  5'- cUAGCCcCGaggcaUGGUCGCAGGGCGauGC-GCg -3'
miRNA:   3'- -GUCGGuGC-----ACCGGCGUCCCGU--CGaCG- -5'
24367 3' -62.1 NC_005264.1 + 157364 0.69 0.470623
Target:  5'- gGGCC-C-UGGCCGUgaugcuGGGCGGCgggGCg -3'
miRNA:   3'- gUCGGuGcACCGGCGu-----CCCGUCGa--CG- -5'
24367 3' -62.1 NC_005264.1 + 106008 0.7 0.384887
Target:  5'- gCAGCCACGa-GCCGCuagcuAGGGCcGCcGCg -3'
miRNA:   3'- -GUCGGUGCacCGGCG-----UCCCGuCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 95778 0.71 0.360485
Target:  5'- gGGCUugGUGGCCuuccucaGguGGGCGGUgaGCc -3'
miRNA:   3'- gUCGGugCACCGG-------CguCCCGUCGa-CG- -5'
24367 3' -62.1 NC_005264.1 + 61809 0.71 0.338652
Target:  5'- gGGCCGCG-GGCauCGCcGGGCAGUgccugGCu -3'
miRNA:   3'- gUCGGUGCaCCG--GCGuCCCGUCGa----CG- -5'
24367 3' -62.1 NC_005264.1 + 122638 0.76 0.172563
Target:  5'- -cGCCGCGgggGGCCGCgAGGGCGGgC-GCg -3'
miRNA:   3'- guCGGUGCa--CCGGCG-UCCCGUC-GaCG- -5'
24367 3' -62.1 NC_005264.1 + 122992 0.75 0.207885
Target:  5'- uGGCCGCGccGGCCggcuuuaccgccaaGCAGGGCGGCacaUGCc -3'
miRNA:   3'- gUCGGUGCa-CCGG--------------CGUCCCGUCG---ACG- -5'
24367 3' -62.1 NC_005264.1 + 19428 0.75 0.20938
Target:  5'- -cGCCGggUGUGGCCGCGGGGC-GCggGUg -3'
miRNA:   3'- guCGGU--GCACCGGCGUCCCGuCGa-CG- -5'
24367 3' -62.1 NC_005264.1 + 84750 0.74 0.224849
Target:  5'- gAGUCACGU-GCCGCAacgacGGGCAGC-GCg -3'
miRNA:   3'- gUCGGUGCAcCGGCGU-----CCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 85025 0.74 0.224849
Target:  5'- aGGCCAUGUG-CCGCGGGGCAuucgGCa -3'
miRNA:   3'- gUCGGUGCACcGGCGUCCCGUcga-CG- -5'
24367 3' -62.1 NC_005264.1 + 124299 0.73 0.277123
Target:  5'- gAGUCGCGgccGGaCgGCGGGGCGGCgGCu -3'
miRNA:   3'- gUCGGUGCa--CC-GgCGUCCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 86164 0.72 0.310141
Target:  5'- aCAGCCugGUGGCCGUGGaaGCAuuGgaGCg -3'
miRNA:   3'- -GUCGGugCACCGGCGUCc-CGU--CgaCG- -5'
24367 3' -62.1 NC_005264.1 + 68246 0.72 0.310141
Target:  5'- aAGCCAUGcccGcGCCGC-GGGCGGcCUGCu -3'
miRNA:   3'- gUCGGUGCa--C-CGGCGuCCCGUC-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.