miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24367 3' -62.1 NC_005264.1 + 30403 0.66 0.653801
Target:  5'- gCGGUCGCGc-GCCGguGcGGagAGCUGCg -3'
miRNA:   3'- -GUCGGUGCacCGGCguC-CCg-UCGACG- -5'
24367 3' -62.1 NC_005264.1 + 83126 0.66 0.594463
Target:  5'- -cGCCAa--GGCCGCGGaGGCGcGuCUGCc -3'
miRNA:   3'- guCGGUgcaCCGGCGUC-CCGU-C-GACG- -5'
24367 3' -62.1 NC_005264.1 + 26353 0.66 0.594463
Target:  5'- uUAGUCuuGUGcGCCGC--GGCAgGCUGCg -3'
miRNA:   3'- -GUCGGugCAC-CGGCGucCCGU-CGACG- -5'
24367 3' -62.1 NC_005264.1 + 132487 1.1 0.000647
Target:  5'- gCAGCCACGUGGCCGCAGGGCAGCUGCu -3'
miRNA:   3'- -GUCGGUGCACCGGCGUCCCGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 29920 0.66 0.634009
Target:  5'- cCAGCCucauGCGUuGUccauaaCGCAGGGCAGCcuucGCu -3'
miRNA:   3'- -GUCGG----UGCAcCG------GCGUCCCGUCGa---CG- -5'
24367 3' -62.1 NC_005264.1 + 102737 0.66 0.634009
Target:  5'- aAGUCGCGgcguugugGGCCGCc-GGCAGUagGCu -3'
miRNA:   3'- gUCGGUGCa-------CCGGCGucCCGUCGa-CG- -5'
24367 3' -62.1 NC_005264.1 + 151894 0.66 0.624107
Target:  5'- uCAGCUguAUGUGGCgGaGGGGaCGGCgGCu -3'
miRNA:   3'- -GUCGG--UGCACCGgCgUCCC-GUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 31400 0.66 0.624107
Target:  5'- aAGCacguaGCG-GGCCGCcucGGGGCGGgaGa -3'
miRNA:   3'- gUCGg----UGCaCCGGCG---UCCCGUCgaCg -5'
24367 3' -62.1 NC_005264.1 + 102875 0.66 0.614211
Target:  5'- -cGCCGCGUGGCUGa---GCGGC-GCg -3'
miRNA:   3'- guCGGUGCACCGGCguccCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 25215 0.66 0.604327
Target:  5'- -cGCaCACgGUGGCC--AGGGCAGUgccgGCa -3'
miRNA:   3'- guCG-GUG-CACCGGcgUCCCGUCGa---CG- -5'
24367 3' -62.1 NC_005264.1 + 9887 0.66 0.613222
Target:  5'- -cGCCACGgccuucccagcccUGGCgGCAGaaaGGCGGC-GCu -3'
miRNA:   3'- guCGGUGC-------------ACCGgCGUC---CCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 79399 0.66 0.621137
Target:  5'- -cGCCGCGggcguggcgaGGCCGCGgcggaacccagcguGGGCGG-UGCg -3'
miRNA:   3'- guCGGUGCa---------CCGGCGU--------------CCCGUCgACG- -5'
24367 3' -62.1 NC_005264.1 + 11772 0.66 0.64391
Target:  5'- cCGGgCGCcUGGCuCGCacuccGGGGCAGCccgagGCg -3'
miRNA:   3'- -GUCgGUGcACCG-GCG-----UCCCGUCGa----CG- -5'
24367 3' -62.1 NC_005264.1 + 100008 0.66 0.610256
Target:  5'- -cGCgACGcggaaauaaagaaGGCCGCGGcGGCGcuGCUGCg -3'
miRNA:   3'- guCGgUGCa------------CCGGCGUC-CCGU--CGACG- -5'
24367 3' -62.1 NC_005264.1 + 25366 0.66 0.64391
Target:  5'- gAGCgu-GUGGUCGaggAGGGCGGCUaGCa -3'
miRNA:   3'- gUCGgugCACCGGCg--UCCCGUCGA-CG- -5'
24367 3' -62.1 NC_005264.1 + 95440 0.66 0.621137
Target:  5'- aAGCCGuCGUGgaauacgcuaccgcGCCgGCGGGcGCAGCgaGCg -3'
miRNA:   3'- gUCGGU-GCAC--------------CGG-CGUCC-CGUCGa-CG- -5'
24367 3' -62.1 NC_005264.1 + 139432 0.66 0.604327
Target:  5'- uGGCguaCGCGUgcucGGCCGUcacaagAGGGCGGCcagGCg -3'
miRNA:   3'- gUCG---GUGCA----CCGGCG------UCCCGUCGa--CG- -5'
24367 3' -62.1 NC_005264.1 + 113684 0.67 0.584625
Target:  5'- -uGCCGCGgccGCUGUGGGGCAuGUcuUGCa -3'
miRNA:   3'- guCGGUGCac-CGGCGUCCCGU-CG--ACG- -5'
24367 3' -62.1 NC_005264.1 + 121202 0.66 0.634009
Target:  5'- cCGGCCGCGcuGCCGCAucuGGcCAGCcGCu -3'
miRNA:   3'- -GUCGGUGCacCGGCGUc--CC-GUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 73597 0.66 0.634009
Target:  5'- aAGUUugGgguggGGCCGCAGGcCuGCUGg -3'
miRNA:   3'- gUCGGugCa----CCGGCGUCCcGuCGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.