miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24367 3' -62.1 NC_005264.1 + 10987 0.66 0.594463
Target:  5'- --cCCACGUGucGCCGCcGGaGCGGCgGCc -3'
miRNA:   3'- gucGGUGCAC--CGGCGuCC-CGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 11772 0.66 0.64391
Target:  5'- cCGGgCGCcUGGCuCGCacuccGGGGCAGCccgagGCg -3'
miRNA:   3'- -GUCgGUGcACCG-GCG-----UCCCGUCGa----CG- -5'
24367 3' -62.1 NC_005264.1 + 30403 0.66 0.653801
Target:  5'- gCGGUCGCGc-GCCGguGcGGagAGCUGCg -3'
miRNA:   3'- -GUCGGUGCacCGGCguC-CCg-UCGACG- -5'
24367 3' -62.1 NC_005264.1 + 29428 0.66 0.634009
Target:  5'- -uGuCCGCGUaGGCUuuGGGGCcaccaacgGGCUGCg -3'
miRNA:   3'- guC-GGUGCA-CCGGcgUCCCG--------UCGACG- -5'
24367 3' -62.1 NC_005264.1 + 42296 0.66 0.594463
Target:  5'- uCGGCUucCGgGGCCgucGCAGGGCuGCcgGCa -3'
miRNA:   3'- -GUCGGu-GCaCCGG---CGUCCCGuCGa-CG- -5'
24367 3' -62.1 NC_005264.1 + 100018 0.66 0.594463
Target:  5'- --cCCAuagUGUGGCCGUccGGGGgaacUAGCUGCg -3'
miRNA:   3'- gucGGU---GCACCGGCG--UCCC----GUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 75185 0.66 0.60334
Target:  5'- -uGCC-CGUuGCCGcCAGGucccgcgccccacGCGGCUGCa -3'
miRNA:   3'- guCGGuGCAcCGGC-GUCC-------------CGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 68330 0.66 0.604327
Target:  5'- --cCCACGUGGCCGa----CGGCUGCa -3'
miRNA:   3'- gucGGUGCACCGGCgucccGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 77456 0.66 0.604327
Target:  5'- --aCCGCGUGGUCGCGGuacacaGCGGCUcggGCu -3'
miRNA:   3'- gucGGUGCACCGGCGUCc-----CGUCGA---CG- -5'
24367 3' -62.1 NC_005264.1 + 149430 0.66 0.653801
Target:  5'- gCGGUCGCGc-GCCGguGcGGagAGCUGCg -3'
miRNA:   3'- -GUCGGUGCacCGGCguC-CCg-UCGACG- -5'
24367 3' -62.1 NC_005264.1 + 111400 0.66 0.634009
Target:  5'- -cGCCAacaaGGUCGUggAGGGCGGcCUGCc -3'
miRNA:   3'- guCGGUgca-CCGGCG--UCCCGUC-GACG- -5'
24367 3' -62.1 NC_005264.1 + 3605 0.66 0.624107
Target:  5'- aGGCCgugGUGGaCGguGGGC-GCUGUg -3'
miRNA:   3'- gUCGGug-CACCgGCguCCCGuCGACG- -5'
24367 3' -62.1 NC_005264.1 + 73497 0.66 0.624107
Target:  5'- cCAGUCaacaaccuuguACGUGGUCGaggaagaugaCGGGGCAGUgcggGCa -3'
miRNA:   3'- -GUCGG-----------UGCACCGGC----------GUCCCGUCGa---CG- -5'
24367 3' -62.1 NC_005264.1 + 32540 0.66 0.624107
Target:  5'- uCGGCCcuggcuguggAUGUGGCUGCcGcGGUAGCcGCc -3'
miRNA:   3'- -GUCGG----------UGCACCGGCGuC-CCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 117425 0.66 0.634009
Target:  5'- gGGCUGuCGcGGCgCGCAGGGC-GCcGCc -3'
miRNA:   3'- gUCGGU-GCaCCG-GCGUCCCGuCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 150427 0.66 0.624107
Target:  5'- aAGCacguaGCG-GGCCGCcucGGGGCGGgaGa -3'
miRNA:   3'- gUCGg----UGCaCCGGCG---UCCCGUCgaCg -5'
24367 3' -62.1 NC_005264.1 + 122778 0.66 0.614211
Target:  5'- gGGCCucuu-GCCGcCGGGGC-GCUGCg -3'
miRNA:   3'- gUCGGugcacCGGC-GUCCCGuCGACG- -5'
24367 3' -62.1 NC_005264.1 + 136927 0.66 0.653801
Target:  5'- gCAGCCGCuucGUGGCgGacaagaAGGcGCAGC-GCc -3'
miRNA:   3'- -GUCGGUG---CACCGgCg-----UCC-CGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 130798 0.66 0.64391
Target:  5'- cCGGgCGCcUGGCuCGCacuccGGGGCAGCccgagGCg -3'
miRNA:   3'- -GUCgGUGcACCG-GCG-----UCCCGUCGa----CG- -5'
24367 3' -62.1 NC_005264.1 + 128913 0.66 0.613222
Target:  5'- -cGCCACGgccuucccagcccUGGCgGCAGaaaGGCGGC-GCu -3'
miRNA:   3'- guCGGUGC-------------ACCGgCGUC---CCGUCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.