miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24367 3' -62.1 NC_005264.1 + 1212 0.67 0.536031
Target:  5'- gCGGCCA--UGGCUGCGGGGUuGCa-- -3'
miRNA:   3'- -GUCGGUgcACCGGCGUCCCGuCGacg -5'
24367 3' -62.1 NC_005264.1 + 1668 0.67 0.545651
Target:  5'- gGGCgACGguggGGCaaaGUauuGGGGCGGcCUGCa -3'
miRNA:   3'- gUCGgUGCa---CCGg--CG---UCCCGUC-GACG- -5'
24367 3' -62.1 NC_005264.1 + 3605 0.66 0.624107
Target:  5'- aGGCCgugGUGGaCGguGGGC-GCUGUg -3'
miRNA:   3'- gUCGGug-CACCgGCguCCCGuCGACG- -5'
24367 3' -62.1 NC_005264.1 + 3611 0.76 0.172563
Target:  5'- -cGCCGCGgggGGCCGCgAGGGCGGgC-GCg -3'
miRNA:   3'- guCGGUGCa--CCGGCG-UCCCGUC-GaCG- -5'
24367 3' -62.1 NC_005264.1 + 3648 0.67 0.534114
Target:  5'- -cGUCGCGaUGGCCGCcgucucgacgauGGGCGGCcGUc -3'
miRNA:   3'- guCGGUGC-ACCGGCGu-----------CCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 3752 0.66 0.614211
Target:  5'- gGGCCucuu-GCCGcCGGGGC-GCUGCg -3'
miRNA:   3'- gUCGGugcacCGGC-GUCCCGuCGACG- -5'
24367 3' -62.1 NC_005264.1 + 3824 0.67 0.554356
Target:  5'- gGGCCcggGCGgGGCCGCAGGaggaaauacgaccGCAGaCUcGCa -3'
miRNA:   3'- gUCGG---UGCaCCGGCGUCC-------------CGUC-GA-CG- -5'
24367 3' -62.1 NC_005264.1 + 3966 0.75 0.203942
Target:  5'- uGGCCGCGccGGCCggcuuuaccgccaGCAGGGCGGCacaUGCc -3'
miRNA:   3'- gUCGGUGCa-CCGG-------------CGUCCCGUCG---ACG- -5'
24367 3' -62.1 NC_005264.1 + 4266 0.78 0.121858
Target:  5'- -uGCCGCGcgGGaaCCGCGGGGCGGCgGCa -3'
miRNA:   3'- guCGGUGCa-CC--GGCGUCCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 5272 0.73 0.277123
Target:  5'- gAGUCGCGgccGGaCgGCGGGGCGGCgGCu -3'
miRNA:   3'- gUCGGUGCa--CC-GgCGUCCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 5399 0.7 0.417947
Target:  5'- -uGCCAgG-GGCCaGCAGGGCGuacGCgGCa -3'
miRNA:   3'- guCGGUgCaCCGG-CGUCCCGU---CGaCG- -5'
24367 3' -62.1 NC_005264.1 + 8059 0.68 0.526471
Target:  5'- uCAcCCACGUcgcGGCCGCAgucGGGCAcggGCgGCg -3'
miRNA:   3'- -GUcGGUGCA---CCGGCGU---CCCGU---CGaCG- -5'
24367 3' -62.1 NC_005264.1 + 8294 0.68 0.526471
Target:  5'- -cGCC-CGUGGgCGacgGGGGCAcCUGCg -3'
miRNA:   3'- guCGGuGCACCgGCg--UCCCGUcGACG- -5'
24367 3' -62.1 NC_005264.1 + 9887 0.66 0.613222
Target:  5'- -cGCCACGgccuucccagcccUGGCgGCAGaaaGGCGGC-GCu -3'
miRNA:   3'- guCGGUGC-------------ACCGgCGUC---CCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 10987 0.66 0.594463
Target:  5'- --cCCACGUGucGCCGCcGGaGCGGCgGCc -3'
miRNA:   3'- gucGGUGCAC--CGGCGuCC-CGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 11772 0.66 0.64391
Target:  5'- cCGGgCGCcUGGCuCGCacuccGGGGCAGCccgagGCg -3'
miRNA:   3'- -GUCgGUGcACCG-GCG-----UCCCGUCGa----CG- -5'
24367 3' -62.1 NC_005264.1 + 12186 0.69 0.461604
Target:  5'- cUAGCCcCGaggcaUGGUCGCAGGGCGauGC-GCg -3'
miRNA:   3'- -GUCGGuGC-----ACCGGCGUCCCGU--CGaCG- -5'
24367 3' -62.1 NC_005264.1 + 12281 0.67 0.536031
Target:  5'- -uGCCGuacCcUGGCgGCAGGGCGG-UGCg -3'
miRNA:   3'- guCGGU---GcACCGgCGUCCCGUCgACG- -5'
24367 3' -62.1 NC_005264.1 + 15575 0.8 0.09212
Target:  5'- gCAGCU-CGUGGCCaagcuuGCGGGcGCAGCUGCg -3'
miRNA:   3'- -GUCGGuGCACCGG------CGUCC-CGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 16425 0.67 0.545651
Target:  5'- gGGCCGCucgacuGCCGCGGGGC--CUGCc -3'
miRNA:   3'- gUCGGUGcac---CGGCGUCCCGucGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.