miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24367 3' -62.1 NC_005264.1 + 16481 0.76 0.176828
Target:  5'- gCAGCCGCgGUGGCCuGCGGGGUcgaGGCacgccgGCg -3'
miRNA:   3'- -GUCGGUG-CACCGG-CGUCCCG---UCGa-----CG- -5'
24367 3' -62.1 NC_005264.1 + 16558 0.69 0.470623
Target:  5'- uCAG-CGCGgugGGCgGCgccGGGGCGGCgGCg -3'
miRNA:   3'- -GUCgGUGCa--CCGgCG---UCCCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 19428 0.75 0.20938
Target:  5'- -cGCCGggUGUGGCCGCGGGGC-GCggGUg -3'
miRNA:   3'- guCGGU--GCACCGGCGUCCCGuCGa-CG- -5'
24367 3' -62.1 NC_005264.1 + 21518 0.67 0.536031
Target:  5'- -cGUCGCaGUGGgCGCAGGuGUAGUUGa -3'
miRNA:   3'- guCGGUG-CACCgGCGUCC-CGUCGACg -5'
24367 3' -62.1 NC_005264.1 + 24947 0.69 0.443846
Target:  5'- aAGCaCAUGUG-CCGUaccAGGGC-GCUGCg -3'
miRNA:   3'- gUCG-GUGCACcGGCG---UCCCGuCGACG- -5'
24367 3' -62.1 NC_005264.1 + 25215 0.66 0.604327
Target:  5'- -cGCaCACgGUGGCC--AGGGCAGUgccgGCa -3'
miRNA:   3'- guCG-GUG-CACCGGcgUCCCGUCGa---CG- -5'
24367 3' -62.1 NC_005264.1 + 25366 0.66 0.64391
Target:  5'- gAGCgu-GUGGUCGaggAGGGCGGCUaGCa -3'
miRNA:   3'- gUCGgugCACCGGCg--UCCCGUCGA-CG- -5'
24367 3' -62.1 NC_005264.1 + 26353 0.66 0.594463
Target:  5'- uUAGUCuuGUGcGCCGC--GGCAgGCUGCg -3'
miRNA:   3'- -GUCGGugCAC-CGGCGucCCGU-CGACG- -5'
24367 3' -62.1 NC_005264.1 + 29428 0.66 0.634009
Target:  5'- -uGuCCGCGUaGGCUuuGGGGCcaccaacgGGCUGCg -3'
miRNA:   3'- guC-GGUGCA-CCGGcgUCCCG--------UCGACG- -5'
24367 3' -62.1 NC_005264.1 + 29920 0.66 0.634009
Target:  5'- cCAGCCucauGCGUuGUccauaaCGCAGGGCAGCcuucGCu -3'
miRNA:   3'- -GUCGG----UGCAcCG------GCGUCCCGUCGa---CG- -5'
24367 3' -62.1 NC_005264.1 + 30362 0.68 0.50755
Target:  5'- gCGGCCACGUGGCUGCc--GUAauuCUGCa -3'
miRNA:   3'- -GUCGGUGCACCGGCGuccCGUc--GACG- -5'
24367 3' -62.1 NC_005264.1 + 30403 0.66 0.653801
Target:  5'- gCGGUCGCGc-GCCGguGcGGagAGCUGCg -3'
miRNA:   3'- -GUCGGUGCacCGGCguC-CCg-UCGACG- -5'
24367 3' -62.1 NC_005264.1 + 31400 0.66 0.624107
Target:  5'- aAGCacguaGCG-GGCCGCcucGGGGCGGgaGa -3'
miRNA:   3'- gUCGg----UGCaCCGGCG---UCCCGUCgaCg -5'
24367 3' -62.1 NC_005264.1 + 32540 0.66 0.624107
Target:  5'- uCGGCCcuggcuguggAUGUGGCUGCcGcGGUAGCcGCc -3'
miRNA:   3'- -GUCGG----------UGCACCGGCGuC-CCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 37192 0.67 0.554356
Target:  5'- --cCCGCGUGGCCGU-GGGCAuaauuucccacgcGCUcGCc -3'
miRNA:   3'- gucGGUGCACCGGCGuCCCGU-------------CGA-CG- -5'
24367 3' -62.1 NC_005264.1 + 38337 0.69 0.470623
Target:  5'- gGGCC-C-UGGCCGUgaugcuGGGCGGCgggGCg -3'
miRNA:   3'- gUCGGuGcACCGGCGu-----CCCGUCGa--CG- -5'
24367 3' -62.1 NC_005264.1 + 42296 0.66 0.594463
Target:  5'- uCGGCUucCGgGGCCgucGCAGGGCuGCcgGCa -3'
miRNA:   3'- -GUCGGu-GCaCCGG---CGUCCCGuCGa-CG- -5'
24367 3' -62.1 NC_005264.1 + 42612 0.69 0.470623
Target:  5'- gCAGCCA--UGGCCGCGGacgcccGGUccGCUGCg -3'
miRNA:   3'- -GUCGGUgcACCGGCGUC------CCGu-CGACG- -5'
24367 3' -62.1 NC_005264.1 + 52326 0.7 0.40952
Target:  5'- gCAGCUucagGGUCGCuGGGCGgGCUGCc -3'
miRNA:   3'- -GUCGGugcaCCGGCGuCCCGU-CGACG- -5'
24367 3' -62.1 NC_005264.1 + 52533 0.68 0.492623
Target:  5'- -cGCCGCGUGGCagaGUAcugcaucgauggaauGGGCGG-UGCg -3'
miRNA:   3'- guCGGUGCACCGg--CGU---------------CCCGUCgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.