miRNA display CGI


Results 1 - 20 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24367 3' -62.1 NC_005264.1 + 161639 0.69 0.470623
Target:  5'- gCAGCCA--UGGCCGCGGacgcccGGUccGCUGCg -3'
miRNA:   3'- -GUCGGUgcACCGGCGUC------CCGu-CGACG- -5'
24367 3' -62.1 NC_005264.1 + 160382 0.67 0.56505
Target:  5'- cCAGCacgcuaACGUGuGCCGCaAGGaagaguGCAgGCUGCu -3'
miRNA:   3'- -GUCGg-----UGCAC-CGGCG-UCC------CGU-CGACG- -5'
24367 3' -62.1 NC_005264.1 + 157364 0.69 0.470623
Target:  5'- gGGCC-C-UGGCCGUgaugcuGGGCGGCgggGCg -3'
miRNA:   3'- gUCGGuGcACCGGCGu-----CCCGUCGa--CG- -5'
24367 3' -62.1 NC_005264.1 + 156219 0.67 0.554356
Target:  5'- --cCCGCGUGGCCGU-GGGCAuaauuucccacgcGCUcGCc -3'
miRNA:   3'- gucGGUGCACCGGCGuCCCGU-------------CGA-CG- -5'
24367 3' -62.1 NC_005264.1 + 154628 0.69 0.469717
Target:  5'- uCGGaCCA-GcGGCCGCGGGGCAuaaugccagucacGCUGUu -3'
miRNA:   3'- -GUC-GGUgCaCCGGCGUCCCGU-------------CGACG- -5'
24367 3' -62.1 NC_005264.1 + 154494 0.69 0.435112
Target:  5'- aAGCCACGguuaaGGuCUGCGGGGCGcacauGCcGCg -3'
miRNA:   3'- gUCGGUGCa----CC-GGCGUCCCGU-----CGaCG- -5'
24367 3' -62.1 NC_005264.1 + 152751 0.69 0.461604
Target:  5'- aCGGCCGCGauGCCcccgGCGGGagauuccgccGCGGCUGCa -3'
miRNA:   3'- -GUCGGUGCacCGG----CGUCC----------CGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 151894 0.66 0.624107
Target:  5'- uCAGCUguAUGUGGCgGaGGGGaCGGCgGCu -3'
miRNA:   3'- -GUCGG--UGCACCGgCgUCCC-GUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 150427 0.66 0.624107
Target:  5'- aAGCacguaGCG-GGCCGCcucGGGGCGGgaGa -3'
miRNA:   3'- gUCGg----UGCaCCGGCG---UCCCGUCgaCg -5'
24367 3' -62.1 NC_005264.1 + 149575 0.7 0.384887
Target:  5'- aCAGCCcCG-GGCgG-AGGGgGGCUGCu -3'
miRNA:   3'- -GUCGGuGCaCCGgCgUCCCgUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 149430 0.66 0.653801
Target:  5'- gCGGUCGCGc-GCCGguGcGGagAGCUGCg -3'
miRNA:   3'- -GUCGGUGCacCGGCguC-CCg-UCGACG- -5'
24367 3' -62.1 NC_005264.1 + 148898 0.69 0.434244
Target:  5'- -cGCCGCGUGGCauagacuUGCuGcGGCAGCuuUGCc -3'
miRNA:   3'- guCGGUGCACCG-------GCGuC-CCGUCG--ACG- -5'
24367 3' -62.1 NC_005264.1 + 146346 0.68 0.488923
Target:  5'- -cGCCgGCGUGccucgaccCCGCAGGccaccGCGGCUGCg -3'
miRNA:   3'- guCGG-UGCACc-------GGCGUCC-----CGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 139432 0.66 0.604327
Target:  5'- uGGCguaCGCGUgcucGGCCGUcacaagAGGGCGGCcagGCg -3'
miRNA:   3'- gUCG---GUGCA----CCGGCG------UCCCGUCGa--CG- -5'
24367 3' -62.1 NC_005264.1 + 136927 0.66 0.653801
Target:  5'- gCAGCCGCuucGUGGCgGacaagaAGGcGCAGC-GCc -3'
miRNA:   3'- -GUCGGUG---CACCGgCg-----UCC-CGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 132917 0.68 0.526471
Target:  5'- gCAGCgGCGUaccucccuaGcGCCGaCGGGGUAGCgccGCa -3'
miRNA:   3'- -GUCGgUGCA---------C-CGGC-GUCCCGUCGa--CG- -5'
24367 3' -62.1 NC_005264.1 + 132487 1.1 0.000647
Target:  5'- gCAGCCACGUGGCCGCAGGGCAGCUGCu -3'
miRNA:   3'- -GUCGGUGCACCGGCGUCCCGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 132394 0.76 0.15796
Target:  5'- uGGUgaACGUGGCCGCAGGcacgagcuacaagccGCGGCUGUa -3'
miRNA:   3'- gUCGg-UGCACCGGCGUCC---------------CGUCGACG- -5'
24367 3' -62.1 NC_005264.1 + 131213 0.69 0.461604
Target:  5'- cUAGCCcCGaggcaUGGUCGCAGGGCGauGC-GCg -3'
miRNA:   3'- -GUCGGuGC-----ACCGGCGUCCCGU--CGaCG- -5'
24367 3' -62.1 NC_005264.1 + 130798 0.66 0.64391
Target:  5'- cCGGgCGCcUGGCuCGCacuccGGGGCAGCccgagGCg -3'
miRNA:   3'- -GUCgGUGcACCG-GCG-----UCCCGUCGa----CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.