Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24369 | 3' | -59 | NC_005264.1 | + | 18675 | 0.68 | 0.684812 |
Target: 5'- cACGUGCcuGACUCGCcggguuggaaaaGCacucuuacGGUGCCCCCGu -3' miRNA: 3'- -UGUAUGu-CUGAGUG------------CG--------CCGCGGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 149862 | 0.68 | 0.681851 |
Target: 5'- ---aACGGGCUCGCGUcgucgucggcggcgGcGCGCCgCCCGg -3' miRNA: 3'- uguaUGUCUGAGUGCG--------------C-CGCGG-GGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 30836 | 0.68 | 0.681851 |
Target: 5'- ---aACGGGCUCGCGUcgucgucggcggcgGcGCGCCgCCCGg -3' miRNA: 3'- uguaUGUCUGAGUGCG--------------C-CGCGG-GGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 51991 | 0.68 | 0.674929 |
Target: 5'- aGCuauUGCGGACgucgCGCGCGGaGCgaCCCCGc -3' miRNA: 3'- -UGu--AUGUCUGa---GUGCGCCgCG--GGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 112976 | 0.68 | 0.674929 |
Target: 5'- cGCGUAUAcGCU-GCGCGGCGUcaccagggCCCCGg -3' miRNA: 3'- -UGUAUGUcUGAgUGCGCCGCG--------GGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 116111 | 0.68 | 0.665012 |
Target: 5'- uACAUGcCAGACauaGCGCuGCGCCUCUGc -3' miRNA: 3'- -UGUAU-GUCUGag-UGCGcCGCGGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 115017 | 0.69 | 0.655071 |
Target: 5'- aACAUcuGCAGGCUCuucuGCGCcuuauGCGCCCCgGc -3' miRNA: 3'- -UGUA--UGUCUGAG----UGCGc----CGCGGGGgC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 158070 | 0.69 | 0.655071 |
Target: 5'- cCAguCGGACuggccgaguUCGCGCGGCGguccaCCCCCGg -3' miRNA: 3'- uGUauGUCUG---------AGUGCGCCGC-----GGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 116431 | 0.69 | 0.655071 |
Target: 5'- gGCGUGCAGcCUCGCgGCGGaccuGgCCCUGa -3' miRNA: 3'- -UGUAUGUCuGAGUG-CGCCg---CgGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 154539 | 0.69 | 0.655071 |
Target: 5'- aGCGUGCcGGCgauggCACGCGGaucUCCCCGg -3' miRNA: 3'- -UGUAUGuCUGa----GUGCGCCgc-GGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 39043 | 0.69 | 0.655071 |
Target: 5'- cCAguCGGACuggccgaguUCGCGCGGCGguccaCCCCCGg -3' miRNA: 3'- uGUauGUCUG---------AGUGCGCCGC-----GGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 119673 | 0.69 | 0.655071 |
Target: 5'- cGCgAUAgAGGCUCACGCGcCcCCCCCu -3' miRNA: 3'- -UG-UAUgUCUGAGUGCGCcGcGGGGGc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 646 | 0.69 | 0.655071 |
Target: 5'- cGCgAUAgAGGCUCACGCGcCcCCCCCu -3' miRNA: 3'- -UG-UAUgUCUGAGUGCGCcGcGGGGGc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 87107 | 0.69 | 0.645112 |
Target: 5'- cGCAccCAGACUgGCcucCGGCGCCCgCGg -3' miRNA: 3'- -UGUauGUCUGAgUGc--GCCGCGGGgGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 25940 | 0.69 | 0.645112 |
Target: 5'- uGCAcgACGGGCUCACGUacGCGCCCaCUu -3' miRNA: 3'- -UGUa-UGUCUGAGUGCGc-CGCGGG-GGc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 144291 | 0.69 | 0.632152 |
Target: 5'- cGCuccgACuGACgccggCGCGCccucagggggagacGGCGCCCCCGa -3' miRNA: 3'- -UGua--UGuCUGa----GUGCG--------------CCGCGGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 44998 | 0.69 | 0.625173 |
Target: 5'- uGCAUGCGcACUC-CGCcGCGCCUCCc -3' miRNA: 3'- -UGUAUGUcUGAGuGCGcCGCGGGGGc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 6425 | 0.69 | 0.615207 |
Target: 5'- cACGUACAcuCUCGCgGCGGCGUCgCUGg -3' miRNA: 3'- -UGUAUGUcuGAGUG-CGCCGCGGgGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 125452 | 0.69 | 0.615207 |
Target: 5'- cACGUACAcuCUCGCgGCGGCGUCgCUGg -3' miRNA: 3'- -UGUAUGUcuGAGUG-CGCCGCGGgGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 118687 | 0.7 | 0.585409 |
Target: 5'- -gAUACGcGCUCGCGCGGCuuaccuGCCCUCc -3' miRNA: 3'- ugUAUGUcUGAGUGCGCCG------CGGGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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