miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24369 3' -59 NC_005264.1 + 142313 0.67 0.770893
Target:  5'- uGCA-ACGGGCgcaACGC-GUGCCCCUGg -3'
miRNA:   3'- -UGUaUGUCUGag-UGCGcCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 141273 0.67 0.761685
Target:  5'- ---cACGGuCUCgGCGcCGGCGUCCUCGg -3'
miRNA:   3'- uguaUGUCuGAG-UGC-GCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 152739 0.67 0.752367
Target:  5'- cACGUcACGGACacggC-CGCGaUGCCCCCGg -3'
miRNA:   3'- -UGUA-UGUCUGa---GuGCGCcGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 37667 0.67 0.752367
Target:  5'- cGCgAUGCGcGACgggCGCGCGGCccucGCCCUCc -3'
miRNA:   3'- -UG-UAUGU-CUGa--GUGCGCCG----CGGGGGc -5'
24369 3' -59 NC_005264.1 + 93254 0.67 0.752367
Target:  5'- aGCAaGCGGGCU-AgGUGGCGCcagggCCCCGg -3'
miRNA:   3'- -UGUaUGUCUGAgUgCGCCGCG-----GGGGC- -5'
24369 3' -59 NC_005264.1 + 118936 0.67 0.74295
Target:  5'- gGCG-ACGGccgcGCUCAuCGUcuccGGCGCCCCCu -3'
miRNA:   3'- -UGUaUGUC----UGAGU-GCG----CCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 162450 0.67 0.73344
Target:  5'- -gGUACAcGAC-CGCGcCGGCgcuGCCCCCc -3'
miRNA:   3'- ugUAUGU-CUGaGUGC-GCCG---CGGGGGc -5'
24369 3' -59 NC_005264.1 + 28863 0.67 0.73344
Target:  5'- gUAUAUGGAC-CGCGCGGCGaacgCCaCCGc -3'
miRNA:   3'- uGUAUGUCUGaGUGCGCCGCg---GG-GGC- -5'
24369 3' -59 NC_005264.1 + 137434 0.67 0.723847
Target:  5'- -aGUACuucGGC-CugGCGGUGCUCCUGa -3'
miRNA:   3'- ugUAUGu--CUGaGugCGCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 157827 0.68 0.71418
Target:  5'- ---gACGuACUC-CGCGGCGaCCCCGg -3'
miRNA:   3'- uguaUGUcUGAGuGCGCCGCgGGGGC- -5'
24369 3' -59 NC_005264.1 + 6228 0.68 0.71418
Target:  5'- uACGgagACGGGUUC-UGCGGCGgCCCCGc -3'
miRNA:   3'- -UGUa--UGUCUGAGuGCGCCGCgGGGGC- -5'
24369 3' -59 NC_005264.1 + 88118 0.68 0.71418
Target:  5'- aGCAggagACAGuuUCGCGCGccGCGCCCUa- -3'
miRNA:   3'- -UGUa---UGUCugAGUGCGC--CGCGGGGgc -5'
24369 3' -59 NC_005264.1 + 146617 0.68 0.71418
Target:  5'- ---aGgGGGCUCagaggguaGCGCGGCGCgucCCCCGu -3'
miRNA:   3'- uguaUgUCUGAG--------UGCGCCGCG---GGGGC- -5'
24369 3' -59 NC_005264.1 + 65397 0.68 0.71418
Target:  5'- uACGUcuauCAGAUcCGCgGCGGCGCCCgCa -3'
miRNA:   3'- -UGUAu---GUCUGaGUG-CGCCGCGGGgGc -5'
24369 3' -59 NC_005264.1 + 20135 0.68 0.71418
Target:  5'- -gAUGCGGGCagGCGaUGGCGCgCCgCCGg -3'
miRNA:   3'- ugUAUGUCUGagUGC-GCCGCG-GG-GGC- -5'
24369 3' -59 NC_005264.1 + 38801 0.68 0.71418
Target:  5'- ---gACGuACUC-CGCGGCGaCCCCGg -3'
miRNA:   3'- uguaUGUcUGAGuGCGCCGCgGGGGC- -5'
24369 3' -59 NC_005264.1 + 20699 0.68 0.713209
Target:  5'- uCAUugAGACUCggacaguccaucuGCGCgaGGUGCCUCCu -3'
miRNA:   3'- uGUAugUCUGAG-------------UGCG--CCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 25106 0.68 0.704446
Target:  5'- aGCGggGCAGACUUAgCGCGGCGaagUCCGa -3'
miRNA:   3'- -UGUa-UGUCUGAGU-GCGCCGCgg-GGGC- -5'
24369 3' -59 NC_005264.1 + 156685 0.68 0.694654
Target:  5'- cACGUGCAcgcgaugcgcGACgggCGCGCGGCccucGCCCUCc -3'
miRNA:   3'- -UGUAUGU----------CUGa--GUGCGCCG----CGGGGGc -5'
24369 3' -59 NC_005264.1 + 75678 0.68 0.694654
Target:  5'- -aGUGCGGAgUCGCGCGcaGCGCCgUCu -3'
miRNA:   3'- ugUAUGUCUgAGUGCGC--CGCGGgGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.