Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24369 | 3' | -59 | NC_005264.1 | + | 152739 | 0.67 | 0.752367 |
Target: 5'- cACGUcACGGACacggC-CGCGaUGCCCCCGg -3' miRNA: 3'- -UGUA-UGUCUGa---GuGCGCcGCGGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 93254 | 0.67 | 0.752367 |
Target: 5'- aGCAaGCGGGCU-AgGUGGCGCcagggCCCCGg -3' miRNA: 3'- -UGUaUGUCUGAgUgCGCCGCG-----GGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 118936 | 0.67 | 0.74295 |
Target: 5'- gGCG-ACGGccgcGCUCAuCGUcuccGGCGCCCCCu -3' miRNA: 3'- -UGUaUGUC----UGAGU-GCG----CCGCGGGGGc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 137434 | 0.67 | 0.723847 |
Target: 5'- -aGUACuucGGC-CugGCGGUGCUCCUGa -3' miRNA: 3'- ugUAUGu--CUGaGugCGCCGCGGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 37667 | 0.67 | 0.752367 |
Target: 5'- cGCgAUGCGcGACgggCGCGCGGCccucGCCCUCc -3' miRNA: 3'- -UG-UAUGU-CUGa--GUGCGCCG----CGGGGGc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 142313 | 0.67 | 0.770893 |
Target: 5'- uGCA-ACGGGCgcaACGC-GUGCCCCUGg -3' miRNA: 3'- -UGUaUGUCUGag-UGCGcCGCGGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 141273 | 0.67 | 0.761685 |
Target: 5'- ---cACGGuCUCgGCGcCGGCGUCCUCGg -3' miRNA: 3'- uguaUGUCuGAG-UGC-GCCGCGGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 28863 | 0.67 | 0.73344 |
Target: 5'- gUAUAUGGAC-CGCGCGGCGaacgCCaCCGc -3' miRNA: 3'- uGUAUGUCUGaGUGCGCCGCg---GG-GGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 162450 | 0.67 | 0.73344 |
Target: 5'- -gGUACAcGAC-CGCGcCGGCgcuGCCCCCc -3' miRNA: 3'- ugUAUGU-CUGaGUGC-GCCG---CGGGGGc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 146617 | 0.68 | 0.71418 |
Target: 5'- ---aGgGGGCUCagaggguaGCGCGGCGCgucCCCCGu -3' miRNA: 3'- uguaUgUCUGAG--------UGCGCCGCG---GGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 88118 | 0.68 | 0.71418 |
Target: 5'- aGCAggagACAGuuUCGCGCGccGCGCCCUa- -3' miRNA: 3'- -UGUa---UGUCugAGUGCGC--CGCGGGGgc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 65397 | 0.68 | 0.71418 |
Target: 5'- uACGUcuauCAGAUcCGCgGCGGCGCCCgCa -3' miRNA: 3'- -UGUAu---GUCUGaGUG-CGCCGCGGGgGc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 112976 | 0.68 | 0.674929 |
Target: 5'- cGCGUAUAcGCU-GCGCGGCGUcaccagggCCCCGg -3' miRNA: 3'- -UGUAUGUcUGAgUGCGCCGCG--------GGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 149862 | 0.68 | 0.681851 |
Target: 5'- ---aACGGGCUCGCGUcgucgucggcggcgGcGCGCCgCCCGg -3' miRNA: 3'- uguaUGUCUGAGUGCG--------------C-CGCGG-GGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 156685 | 0.68 | 0.694654 |
Target: 5'- cACGUGCAcgcgaugcgcGACgggCGCGCGGCccucGCCCUCc -3' miRNA: 3'- -UGUAUGU----------CUGa--GUGCGCCG----CGGGGGc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 75678 | 0.68 | 0.694654 |
Target: 5'- -aGUGCGGAgUCGCGCGcaGCGCCgUCu -3' miRNA: 3'- ugUAUGUCUgAGUGCGC--CGCGGgGGc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 20699 | 0.68 | 0.713209 |
Target: 5'- uCAUugAGACUCggacaguccaucuGCGCgaGGUGCCUCCu -3' miRNA: 3'- uGUAugUCUGAG-------------UGCG--CCGCGGGGGc -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 157827 | 0.68 | 0.71418 |
Target: 5'- ---gACGuACUC-CGCGGCGaCCCCGg -3' miRNA: 3'- uguaUGUcUGAGuGCGCCGCgGGGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 25106 | 0.68 | 0.704446 |
Target: 5'- aGCGggGCAGACUUAgCGCGGCGaagUCCGa -3' miRNA: 3'- -UGUa-UGUCUGAGU-GCGCCGCgg-GGGC- -5' |
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24369 | 3' | -59 | NC_005264.1 | + | 6228 | 0.68 | 0.71418 |
Target: 5'- uACGgagACGGGUUC-UGCGGCGgCCCCGc -3' miRNA: 3'- -UGUa--UGUCUGAGuGCGCCGCgGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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