Results 21 - 40 of 80 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24369 | 3' | -59 | NC_005264.1 | + | 25106 | 0.68 | 0.704446 |
Target: 5'- aGCGggGCAGACUUAgCGCGGCGaagUCCGa -3' miRNA: 3'- -UGUa-UGUCUGAGU-GCGCCGCgg-GGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 75678 | 0.68 | 0.694654 |
Target: 5'- -aGUGCGGAgUCGCGCGcaGCGCCgUCu -3' miRNA: 3'- ugUAUGUCUgAGUGCGC--CGCGGgGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 131261 | 0.7 | 0.575533 |
Target: 5'- ---aGCAGACUCGCcccaccucUGGCGCCUCCa -3' miRNA: 3'- uguaUGUCUGAGUGc-------GCCGCGGGGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 128534 | 0.7 | 0.565694 |
Target: 5'- aGCGU-CAG----GCGCGGCGCCCUCGa -3' miRNA: 3'- -UGUAuGUCugagUGCGCCGCGGGGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 115947 | 0.7 | 0.565694 |
Target: 5'- cGCGgcGCAGGCUaggaggUACGCGGCGCCCg-- -3' miRNA: 3'- -UGUa-UGUCUGA------GUGCGCCGCGGGggc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 70639 | 0.7 | 0.564712 |
Target: 5'- cGCGcGCAGGCgcgUCAacaacaccguggcCGCGGCGCCgCCGg -3' miRNA: 3'- -UGUaUGUCUG---AGU-------------GCGCCGCGGgGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 58019 | 0.71 | 0.546154 |
Target: 5'- gGCGgACAGGCcgUCGUGCGGCGCCCgCu -3' miRNA: 3'- -UGUaUGUCUG--AGUGCGCCGCGGGgGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 21203 | 0.71 | 0.526836 |
Target: 5'- cCGUAgUAGACUCAauacgGCGGUGCCCCg- -3' miRNA: 3'- uGUAU-GUCUGAGUg----CGCCGCGGGGgc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 114159 | 0.71 | 0.496485 |
Target: 5'- gACGaGCAGACUCGCGCccagaucuccuCGCCCCCc -3' miRNA: 3'- -UGUaUGUCUGAGUGCGcc---------GCGGGGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 71423 | 0.72 | 0.443633 |
Target: 5'- ---cACAGACUC-CGcCGGUGCCCCgGc -3' miRNA: 3'- uguaUGUCUGAGuGC-GCCGCGGGGgC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 152004 | 0.7 | 0.585409 |
Target: 5'- gACAcGCGGGCUCGCGCauaucgccaucgGGCGCuggucggauugCCCCa -3' miRNA: 3'- -UGUaUGUCUGAGUGCG------------CCGCG-----------GGGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 118687 | 0.7 | 0.585409 |
Target: 5'- -gAUACGcGCUCGCGCGGCuuaccuGCCCUCc -3' miRNA: 3'- ugUAUGUcUGAGUGCGCCG------CGGGGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 156685 | 0.68 | 0.694654 |
Target: 5'- cACGUGCAcgcgaugcgcGACgggCGCGCGGCccucGCCCUCc -3' miRNA: 3'- -UGUAUGU----------CUGa--GUGCGCCG----CGGGGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 149862 | 0.68 | 0.681851 |
Target: 5'- ---aACGGGCUCGCGUcgucgucggcggcgGcGCGCCgCCCGg -3' miRNA: 3'- uguaUGUCUGAGUGCG--------------C-CGCGG-GGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 112976 | 0.68 | 0.674929 |
Target: 5'- cGCGUAUAcGCU-GCGCGGCGUcaccagggCCCCGg -3' miRNA: 3'- -UGUAUGUcUGAgUGCGCCGCG--------GGGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 158070 | 0.69 | 0.655071 |
Target: 5'- cCAguCGGACuggccgaguUCGCGCGGCGguccaCCCCCGg -3' miRNA: 3'- uGUauGUCUG---------AGUGCGCCGC-----GGGGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 119673 | 0.69 | 0.655071 |
Target: 5'- cGCgAUAgAGGCUCACGCGcCcCCCCCu -3' miRNA: 3'- -UG-UAUgUCUGAGUGCGCcGcGGGGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 115017 | 0.69 | 0.655071 |
Target: 5'- aACAUcuGCAGGCUCuucuGCGCcuuauGCGCCCCgGc -3' miRNA: 3'- -UGUA--UGUCUGAG----UGCGc----CGCGGGGgC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 44998 | 0.69 | 0.625173 |
Target: 5'- uGCAUGCGcACUC-CGCcGCGCCUCCc -3' miRNA: 3'- -UGUAUGUcUGAGuGCGcCGCGGGGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 125452 | 0.69 | 0.615207 |
Target: 5'- cACGUACAcuCUCGCgGCGGCGUCgCUGg -3' miRNA: 3'- -UGUAUGUcuGAGUG-CGCCGCGGgGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home