miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24369 3' -59 NC_005264.1 + 25106 0.68 0.704446
Target:  5'- aGCGggGCAGACUUAgCGCGGCGaagUCCGa -3'
miRNA:   3'- -UGUa-UGUCUGAGU-GCGCCGCgg-GGGC- -5'
24369 3' -59 NC_005264.1 + 44998 0.69 0.625173
Target:  5'- uGCAUGCGcACUC-CGCcGCGCCUCCc -3'
miRNA:   3'- -UGUAUGUcUGAGuGCGcCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 115017 0.69 0.655071
Target:  5'- aACAUcuGCAGGCUCuucuGCGCcuuauGCGCCCCgGc -3'
miRNA:   3'- -UGUA--UGUCUGAG----UGCGc----CGCGGGGgC- -5'
24369 3' -59 NC_005264.1 + 119673 0.69 0.655071
Target:  5'- cGCgAUAgAGGCUCACGCGcCcCCCCCu -3'
miRNA:   3'- -UG-UAUgUCUGAGUGCGCcGcGGGGGc -5'
24369 3' -59 NC_005264.1 + 158070 0.69 0.655071
Target:  5'- cCAguCGGACuggccgaguUCGCGCGGCGguccaCCCCCGg -3'
miRNA:   3'- uGUauGUCUG---------AGUGCGCCGC-----GGGGGC- -5'
24369 3' -59 NC_005264.1 + 112976 0.68 0.674929
Target:  5'- cGCGUAUAcGCU-GCGCGGCGUcaccagggCCCCGg -3'
miRNA:   3'- -UGUAUGUcUGAgUGCGCCGCG--------GGGGC- -5'
24369 3' -59 NC_005264.1 + 149862 0.68 0.681851
Target:  5'- ---aACGGGCUCGCGUcgucgucggcggcgGcGCGCCgCCCGg -3'
miRNA:   3'- uguaUGUCUGAGUGCG--------------C-CGCGG-GGGC- -5'
24369 3' -59 NC_005264.1 + 156685 0.68 0.694654
Target:  5'- cACGUGCAcgcgaugcgcGACgggCGCGCGGCccucGCCCUCc -3'
miRNA:   3'- -UGUAUGU----------CUGa--GUGCGCCG----CGGGGGc -5'
24369 3' -59 NC_005264.1 + 75678 0.68 0.694654
Target:  5'- -aGUGCGGAgUCGCGCGcaGCGCCgUCu -3'
miRNA:   3'- ugUAUGUCUgAGUGCGC--CGCGGgGGc -5'
24369 3' -59 NC_005264.1 + 125452 0.69 0.615207
Target:  5'- cACGUACAcuCUCGCgGCGGCGUCgCUGg -3'
miRNA:   3'- -UGUAUGUcuGAGUG-CGCCGCGGgGGC- -5'
24369 3' -59 NC_005264.1 + 118687 0.7 0.585409
Target:  5'- -gAUACGcGCUCGCGCGGCuuaccuGCCCUCc -3'
miRNA:   3'- ugUAUGUcUGAGUGCGCCG------CGGGGGc -5'
24369 3' -59 NC_005264.1 + 152004 0.7 0.585409
Target:  5'- gACAcGCGGGCUCGCGCauaucgccaucgGGCGCuggucggauugCCCCa -3'
miRNA:   3'- -UGUaUGUCUGAGUGCG------------CCGCG-----------GGGGc -5'
24369 3' -59 NC_005264.1 + 71423 0.72 0.443633
Target:  5'- ---cACAGACUC-CGcCGGUGCCCCgGc -3'
miRNA:   3'- uguaUGUCUGAGuGC-GCCGCGGGGgC- -5'
24369 3' -59 NC_005264.1 + 114159 0.71 0.496485
Target:  5'- gACGaGCAGACUCGCGCccagaucuccuCGCCCCCc -3'
miRNA:   3'- -UGUaUGUCUGAGUGCGcc---------GCGGGGGc -5'
24369 3' -59 NC_005264.1 + 21203 0.71 0.526836
Target:  5'- cCGUAgUAGACUCAauacgGCGGUGCCCCg- -3'
miRNA:   3'- uGUAU-GUCUGAGUg----CGCCGCGGGGgc -5'
24369 3' -59 NC_005264.1 + 58019 0.71 0.546154
Target:  5'- gGCGgACAGGCcgUCGUGCGGCGCCCgCu -3'
miRNA:   3'- -UGUaUGUCUG--AGUGCGCCGCGGGgGc -5'
24369 3' -59 NC_005264.1 + 70639 0.7 0.564712
Target:  5'- cGCGcGCAGGCgcgUCAacaacaccguggcCGCGGCGCCgCCGg -3'
miRNA:   3'- -UGUaUGUCUG---AGU-------------GCGCCGCGGgGGC- -5'
24369 3' -59 NC_005264.1 + 115947 0.7 0.565694
Target:  5'- cGCGgcGCAGGCUaggaggUACGCGGCGCCCg-- -3'
miRNA:   3'- -UGUa-UGUCUGA------GUGCGCCGCGGGggc -5'
24369 3' -59 NC_005264.1 + 128534 0.7 0.565694
Target:  5'- aGCGU-CAG----GCGCGGCGCCCUCGa -3'
miRNA:   3'- -UGUAuGUCugagUGCGCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 131261 0.7 0.575533
Target:  5'- ---aGCAGACUCGCcccaccucUGGCGCCUCCa -3'
miRNA:   3'- uguaUGUCUGAGUGc-------GCCGCGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.