miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24369 3' -59 NC_005264.1 + 129904 1.07 0.002262
Target:  5'- aACAUACAGACUCACGCGGCGCCCCCGc -3'
miRNA:   3'- -UGUAUGUCUGAGUGCGCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 50571 0.77 0.257514
Target:  5'- cGCGUGCGGGaagcgCACGCGGCGCUgagcagCCCGg -3'
miRNA:   3'- -UGUAUGUCUga---GUGCGCCGCGG------GGGC- -5'
24369 3' -59 NC_005264.1 + 110626 0.73 0.400713
Target:  5'- gGCGUACcaGCUCGCGCcaccGCGCCCCaCGg -3'
miRNA:   3'- -UGUAUGucUGAGUGCGc---CGCGGGG-GC- -5'
24369 3' -59 NC_005264.1 + 155818 0.73 0.409085
Target:  5'- aGCAcGCAGACcccaauaacuuUCACGuUGGCGCCgCCCGc -3'
miRNA:   3'- -UGUaUGUCUG-----------AGUGC-GCCGCGG-GGGC- -5'
24369 3' -59 NC_005264.1 + 71423 0.72 0.443633
Target:  5'- ---cACAGACUC-CGcCGGUGCCCCgGc -3'
miRNA:   3'- uguaUGUCUGAGuGC-GCCGCGGGGgC- -5'
24369 3' -59 NC_005264.1 + 66477 0.72 0.447178
Target:  5'- cGCGgcCAGACUCaaugcuuggcgggcuGCGCGGCGCgCUCGa -3'
miRNA:   3'- -UGUauGUCUGAG---------------UGCGCCGCGgGGGC- -5'
24369 3' -59 NC_005264.1 + 114159 0.71 0.496485
Target:  5'- gACGaGCAGACUCGCGCccagaucuccuCGCCCCCc -3'
miRNA:   3'- -UGUaUGUCUGAGUGCGcc---------GCGGGGGc -5'
24369 3' -59 NC_005264.1 + 21203 0.71 0.526836
Target:  5'- cCGUAgUAGACUCAauacgGCGGUGCCCCg- -3'
miRNA:   3'- uGUAU-GUCUGAGUg----CGCCGCGGGGgc -5'
24369 3' -59 NC_005264.1 + 58019 0.71 0.546154
Target:  5'- gGCGgACAGGCcgUCGUGCGGCGCCCgCu -3'
miRNA:   3'- -UGUaUGUCUG--AGUGCGCCGCGGGgGc -5'
24369 3' -59 NC_005264.1 + 24371 0.71 0.546154
Target:  5'- gGCAUGaccGGCUU-CGCGGCuCCCCCGg -3'
miRNA:   3'- -UGUAUgu-CUGAGuGCGCCGcGGGGGC- -5'
24369 3' -59 NC_005264.1 + 70639 0.7 0.564712
Target:  5'- cGCGcGCAGGCgcgUCAacaacaccguggcCGCGGCGCCgCCGg -3'
miRNA:   3'- -UGUaUGUCUG---AGU-------------GCGCCGCGGgGGC- -5'
24369 3' -59 NC_005264.1 + 9507 0.7 0.565694
Target:  5'- aGCGU-CAG----GCGCGGCGCCCUCGa -3'
miRNA:   3'- -UGUAuGUCugagUGCGCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 115947 0.7 0.565694
Target:  5'- cGCGgcGCAGGCUaggaggUACGCGGCGCCCg-- -3'
miRNA:   3'- -UGUa-UGUCUGA------GUGCGCCGCGGGggc -5'
24369 3' -59 NC_005264.1 + 128534 0.7 0.565694
Target:  5'- aGCGU-CAG----GCGCGGCGCCCUCGa -3'
miRNA:   3'- -UGUAuGUCugagUGCGCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 149555 0.7 0.575533
Target:  5'- -gGUACAuGACUCuccCGCGGacaGCCCCgGg -3'
miRNA:   3'- ugUAUGU-CUGAGu--GCGCCg--CGGGGgC- -5'
24369 3' -59 NC_005264.1 + 26370 0.7 0.575533
Target:  5'- ---gGCAGGCU-GCGCGGCGCCgUCu -3'
miRNA:   3'- uguaUGUCUGAgUGCGCCGCGGgGGc -5'
24369 3' -59 NC_005264.1 + 12234 0.7 0.575533
Target:  5'- ---aGCAGACUCGCcccaccucUGGCGCCUCCa -3'
miRNA:   3'- uguaUGUCUGAGUGc-------GCCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 131261 0.7 0.575533
Target:  5'- ---aGCAGACUCGCcccaccucUGGCGCCUCCa -3'
miRNA:   3'- uguaUGUCUGAGUGc-------GCCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 32977 0.7 0.585409
Target:  5'- gACAcGCGGGCUCGCGCauaucgccaucgGGCGCuggucggauugCCCCa -3'
miRNA:   3'- -UGUaUGUCUGAGUGCG------------CCGCG-----------GGGGc -5'
24369 3' -59 NC_005264.1 + 152004 0.7 0.585409
Target:  5'- gACAcGCGGGCUCGCGCauaucgccaucgGGCGCuggucggauugCCCCa -3'
miRNA:   3'- -UGUaUGUCUGAGUGCG------------CCGCG-----------GGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.