miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24369 3' -59 NC_005264.1 + 533 0.66 0.806467
Target:  5'- gACcgAuCAGAC-C-CGCGGCGUUCCCu -3'
miRNA:   3'- -UGuaU-GUCUGaGuGCGCCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 646 0.69 0.655071
Target:  5'- cGCgAUAgAGGCUCACGCGcCcCCCCCu -3'
miRNA:   3'- -UG-UAUgUCUGAGUGCGCcGcGGGGGc -5'
24369 3' -59 NC_005264.1 + 6228 0.68 0.71418
Target:  5'- uACGgagACGGGUUC-UGCGGCGgCCCCGc -3'
miRNA:   3'- -UGUa--UGUCUGAGuGCGCCGCgGGGGC- -5'
24369 3' -59 NC_005264.1 + 6425 0.69 0.615207
Target:  5'- cACGUACAcuCUCGCgGCGGCGUCgCUGg -3'
miRNA:   3'- -UGUAUGUcuGAGUG-CGCCGCGGgGGC- -5'
24369 3' -59 NC_005264.1 + 7865 0.66 0.806467
Target:  5'- -uGUGgGGGCg-GCGuCGGCGCCCCa- -3'
miRNA:   3'- ugUAUgUCUGagUGC-GCCGCGGGGgc -5'
24369 3' -59 NC_005264.1 + 9507 0.7 0.565694
Target:  5'- aGCGU-CAG----GCGCGGCGCCCUCGa -3'
miRNA:   3'- -UGUAuGUCugagUGCGCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 10958 0.66 0.797778
Target:  5'- cACAUACAG-CUgAugccCGCGaGaCGCCCCCc -3'
miRNA:   3'- -UGUAUGUCuGAgU----GCGC-C-GCGGGGGc -5'
24369 3' -59 NC_005264.1 + 12234 0.7 0.575533
Target:  5'- ---aGCAGACUCGCcccaccucUGGCGCCUCCa -3'
miRNA:   3'- uguaUGUCUGAGUGc-------GCCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 18675 0.68 0.684812
Target:  5'- cACGUGCcuGACUCGCcggguuggaaaaGCacucuuacGGUGCCCCCGu -3'
miRNA:   3'- -UGUAUGu-CUGAGUG------------CG--------CCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 20135 0.68 0.71418
Target:  5'- -gAUGCGGGCagGCGaUGGCGCgCCgCCGg -3'
miRNA:   3'- ugUAUGUCUGagUGC-GCCGCG-GG-GGC- -5'
24369 3' -59 NC_005264.1 + 20699 0.68 0.713209
Target:  5'- uCAUugAGACUCggacaguccaucuGCGCgaGGUGCCUCCu -3'
miRNA:   3'- uGUAugUCUGAG-------------UGCG--CCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 21203 0.71 0.526836
Target:  5'- cCGUAgUAGACUCAauacgGCGGUGCCCCg- -3'
miRNA:   3'- uGUAU-GUCUGAGUg----CGCCGCGGGGgc -5'
24369 3' -59 NC_005264.1 + 24371 0.71 0.546154
Target:  5'- gGCAUGaccGGCUU-CGCGGCuCCCCCGg -3'
miRNA:   3'- -UGUAUgu-CUGAGuGCGCCGcGGGGGC- -5'
24369 3' -59 NC_005264.1 + 25106 0.68 0.704446
Target:  5'- aGCGggGCAGACUUAgCGCGGCGaagUCCGa -3'
miRNA:   3'- -UGUa-UGUCUGAGU-GCGCCGCgg-GGGC- -5'
24369 3' -59 NC_005264.1 + 25880 0.66 0.815006
Target:  5'- gAC-UGCAGACUCcgcacagugggGCGCuGCGCCUUCu -3'
miRNA:   3'- -UGuAUGUCUGAG-----------UGCGcCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 25940 0.69 0.645112
Target:  5'- uGCAcgACGGGCUCACGUacGCGCCCaCUu -3'
miRNA:   3'- -UGUa-UGUCUGAGUGCGc-CGCGGG-GGc -5'
24369 3' -59 NC_005264.1 + 26370 0.7 0.575533
Target:  5'- ---gGCAGGCU-GCGCGGCGCCgUCu -3'
miRNA:   3'- uguaUGUCUGAgUGCGCCGCGGgGGc -5'
24369 3' -59 NC_005264.1 + 28863 0.67 0.73344
Target:  5'- gUAUAUGGAC-CGCGCGGCGaacgCCaCCGc -3'
miRNA:   3'- uGUAUGUCUGaGUGCGCCGCg---GG-GGC- -5'
24369 3' -59 NC_005264.1 + 30836 0.68 0.681851
Target:  5'- ---aACGGGCUCGCGUcgucgucggcggcgGcGCGCCgCCCGg -3'
miRNA:   3'- uguaUGUCUGAGUGCG--------------C-CGCGG-GGGC- -5'
24369 3' -59 NC_005264.1 + 32977 0.7 0.585409
Target:  5'- gACAcGCGGGCUCGCGCauaucgccaucgGGCGCuggucggauugCCCCa -3'
miRNA:   3'- -UGUaUGUCUGAGUGCG------------CCGCG-----------GGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.