miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24369 3' -59 NC_005264.1 + 162450 0.67 0.73344
Target:  5'- -gGUACAcGAC-CGCGcCGGCgcuGCCCCCc -3'
miRNA:   3'- ugUAUGU-CUGaGUGC-GCCG---CGGGGGc -5'
24369 3' -59 NC_005264.1 + 158595 0.66 0.788948
Target:  5'- gGCAaGCcgGGACugaucuaccuUCGCGUGGCGCCgCCu -3'
miRNA:   3'- -UGUaUG--UCUG----------AGUGCGCCGCGGgGGc -5'
24369 3' -59 NC_005264.1 + 158070 0.69 0.655071
Target:  5'- cCAguCGGACuggccgaguUCGCGCGGCGguccaCCCCCGg -3'
miRNA:   3'- uGUauGUCUG---------AGUGCGCCGC-----GGGGGC- -5'
24369 3' -59 NC_005264.1 + 157827 0.68 0.71418
Target:  5'- ---gACGuACUC-CGCGGCGaCCCCGg -3'
miRNA:   3'- uguaUGUcUGAGuGCGCCGCgGGGGC- -5'
24369 3' -59 NC_005264.1 + 156685 0.68 0.694654
Target:  5'- cACGUGCAcgcgaugcgcGACgggCGCGCGGCccucGCCCUCc -3'
miRNA:   3'- -UGUAUGU----------CUGa--GUGCGCCG----CGGGGGc -5'
24369 3' -59 NC_005264.1 + 155818 0.73 0.409085
Target:  5'- aGCAcGCAGACcccaauaacuuUCACGuUGGCGCCgCCCGc -3'
miRNA:   3'- -UGUaUGUCUG-----------AGUGC-GCCGCGG-GGGC- -5'
24369 3' -59 NC_005264.1 + 154539 0.69 0.655071
Target:  5'- aGCGUGCcGGCgauggCACGCGGaucUCCCCGg -3'
miRNA:   3'- -UGUAUGuCUGa----GUGCGCCgc-GGGGGC- -5'
24369 3' -59 NC_005264.1 + 152739 0.67 0.752367
Target:  5'- cACGUcACGGACacggC-CGCGaUGCCCCCGg -3'
miRNA:   3'- -UGUA-UGUCUGa---GuGCGCcGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 152004 0.7 0.585409
Target:  5'- gACAcGCGGGCUCGCGCauaucgccaucgGGCGCuggucggauugCCCCa -3'
miRNA:   3'- -UGUaUGUCUGAGUGCG------------CCGCG-----------GGGGc -5'
24369 3' -59 NC_005264.1 + 149862 0.68 0.681851
Target:  5'- ---aACGGGCUCGCGUcgucgucggcggcgGcGCGCCgCCCGg -3'
miRNA:   3'- uguaUGUCUGAGUGCG--------------C-CGCGG-GGGC- -5'
24369 3' -59 NC_005264.1 + 149555 0.7 0.575533
Target:  5'- -gGUACAuGACUCuccCGCGGacaGCCCCgGg -3'
miRNA:   3'- ugUAUGU-CUGAGu--GCGCCg--CGGGGgC- -5'
24369 3' -59 NC_005264.1 + 146617 0.68 0.71418
Target:  5'- ---aGgGGGCUCagaggguaGCGCGGCGCgucCCCCGu -3'
miRNA:   3'- uguaUgUCUGAG--------UGCGCCGCG---GGGGC- -5'
24369 3' -59 NC_005264.1 + 144291 0.69 0.632152
Target:  5'- cGCuccgACuGACgccggCGCGCccucagggggagacGGCGCCCCCGa -3'
miRNA:   3'- -UGua--UGuCUGa----GUGCG--------------CCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 142313 0.67 0.770893
Target:  5'- uGCA-ACGGGCgcaACGC-GUGCCCCUGg -3'
miRNA:   3'- -UGUaUGUCUGag-UGCGcCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 141273 0.67 0.761685
Target:  5'- ---cACGGuCUCgGCGcCGGCGUCCUCGg -3'
miRNA:   3'- uguaUGUCuGAG-UGC-GCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 140059 0.66 0.779983
Target:  5'- gGCGUgaGCAGugUCGC-C-GCGCCCCUc -3'
miRNA:   3'- -UGUA--UGUCugAGUGcGcCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 139139 0.66 0.788948
Target:  5'- gGCGUugAGGgUCGguCGGCGUUCCCGc -3'
miRNA:   3'- -UGUAugUCUgAGUgcGCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 137434 0.67 0.723847
Target:  5'- -aGUACuucGGC-CugGCGGUGCUCCUGa -3'
miRNA:   3'- ugUAUGu--CUGaGugCGCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 131261 0.7 0.575533
Target:  5'- ---aGCAGACUCGCcccaccucUGGCGCCUCCa -3'
miRNA:   3'- uguaUGUCUGAGUGc-------GCCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 129904 1.07 0.002262
Target:  5'- aACAUACAGACUCACGCGGCGCCCCCGc -3'
miRNA:   3'- -UGUAUGUCUGAGUGCGCCGCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.