miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24369 3' -59 NC_005264.1 + 37667 0.67 0.752367
Target:  5'- cGCgAUGCGcGACgggCGCGCGGCccucGCCCUCc -3'
miRNA:   3'- -UG-UAUGU-CUGa--GUGCGCCG----CGGGGGc -5'
24369 3' -59 NC_005264.1 + 38801 0.68 0.71418
Target:  5'- ---gACGuACUC-CGCGGCGaCCCCGg -3'
miRNA:   3'- uguaUGUcUGAGuGCGCCGCgGGGGC- -5'
24369 3' -59 NC_005264.1 + 39043 0.69 0.655071
Target:  5'- cCAguCGGACuggccgaguUCGCGCGGCGguccaCCCCCGg -3'
miRNA:   3'- uGUauGUCUG---------AGUGCGCCGC-----GGGGGC- -5'
24369 3' -59 NC_005264.1 + 39568 0.66 0.788948
Target:  5'- gGCAaGCcgGGACugaucuaccuUCGCGUGGCGCCgCCu -3'
miRNA:   3'- -UGUaUG--UCUG----------AGUGCGCCGCGGgGGc -5'
24369 3' -59 NC_005264.1 + 41096 0.66 0.788948
Target:  5'- gAC-UAgGGcCUCGaggGCGGCGCCCCUu -3'
miRNA:   3'- -UGuAUgUCuGAGUg--CGCCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 44828 0.66 0.823387
Target:  5'- ---aGguGGCUCAUGgGcauaGUGCCCCCGa -3'
miRNA:   3'- uguaUguCUGAGUGCgC----CGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 44998 0.69 0.625173
Target:  5'- uGCAUGCGcACUC-CGCcGCGCCUCCc -3'
miRNA:   3'- -UGUAUGUcUGAGuGCGcCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 50571 0.77 0.257514
Target:  5'- cGCGUGCGGGaagcgCACGCGGCGCUgagcagCCCGg -3'
miRNA:   3'- -UGUAUGUCUga---GUGCGCCGCGG------GGGC- -5'
24369 3' -59 NC_005264.1 + 51991 0.68 0.674929
Target:  5'- aGCuauUGCGGACgucgCGCGCGGaGCgaCCCCGc -3'
miRNA:   3'- -UGu--AUGUCUGa---GUGCGCCgCG--GGGGC- -5'
24369 3' -59 NC_005264.1 + 56408 0.66 0.797778
Target:  5'- cGCAUAUcGA---GCGCGGCGCCgUCGa -3'
miRNA:   3'- -UGUAUGuCUgagUGCGCCGCGGgGGC- -5'
24369 3' -59 NC_005264.1 + 58019 0.71 0.546154
Target:  5'- gGCGgACAGGCcgUCGUGCGGCGCCCgCu -3'
miRNA:   3'- -UGUaUGUCUG--AGUGCGCCGCGGGgGc -5'
24369 3' -59 NC_005264.1 + 64132 0.66 0.806467
Target:  5'- cGCcgAuCAGGCUCGCcaCGGCGCCgcgaUCCGg -3'
miRNA:   3'- -UGuaU-GUCUGAGUGc-GCCGCGG----GGGC- -5'
24369 3' -59 NC_005264.1 + 65397 0.68 0.71418
Target:  5'- uACGUcuauCAGAUcCGCgGCGGCGCCCgCa -3'
miRNA:   3'- -UGUAu---GUCUGaGUG-CGCCGCGGGgGc -5'
24369 3' -59 NC_005264.1 + 66477 0.72 0.447178
Target:  5'- cGCGgcCAGACUCaaugcuuggcgggcuGCGCGGCGCgCUCGa -3'
miRNA:   3'- -UGUauGUCUGAG---------------UGCGCCGCGgGGGC- -5'
24369 3' -59 NC_005264.1 + 67019 0.66 0.823387
Target:  5'- gACGgagcgGCGGcCUUGCGCaG-GCCCCCGa -3'
miRNA:   3'- -UGUa----UGUCuGAGUGCGcCgCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 70142 0.66 0.823387
Target:  5'- aACGUGCuuGCUgcCGCgGCGGCGCCUCa- -3'
miRNA:   3'- -UGUAUGucUGA--GUG-CGCCGCGGGGgc -5'
24369 3' -59 NC_005264.1 + 70639 0.7 0.564712
Target:  5'- cGCGcGCAGGCgcgUCAacaacaccguggcCGCGGCGCCgCCGg -3'
miRNA:   3'- -UGUaUGUCUG---AGU-------------GCGCCGCGGgGGC- -5'
24369 3' -59 NC_005264.1 + 71423 0.72 0.443633
Target:  5'- ---cACAGACUC-CGcCGGUGCCCCgGc -3'
miRNA:   3'- uguaUGUCUGAGuGC-GCCGCGGGGgC- -5'
24369 3' -59 NC_005264.1 + 75678 0.68 0.694654
Target:  5'- -aGUGCGGAgUCGCGCGcaGCGCCgUCu -3'
miRNA:   3'- ugUAUGUCUgAGUGCGC--CGCGGgGGc -5'
24369 3' -59 NC_005264.1 + 87107 0.69 0.645112
Target:  5'- cGCAccCAGACUgGCcucCGGCGCCCgCGg -3'
miRNA:   3'- -UGUauGUCUGAgUGc--GCCGCGGGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.